Source Code for Module AutoDockTools.Utilities24.summarize_time

 1  #!/usr/bin/env python2.4 
 2  # 
 3  #  
 4  # 
 5  # $Header: /opt/cvs/python/packages/share1.5/AutoDockTools/Utilities24/summarize_time.py,v 1.1 2007/01/09 19:05:20 rhuey Exp $ 
 6  # 
 7  import os, glob, Numeric 
 8  from AutoDockTools.DlgParser import DlgParser 
 9   
10   
11  if __name__ == '__main__': 
12      import sys 
13      import getopt 
14   
15   
16 -    def usage(): 
17          "Print helpful, accurate usage statement to stdout." 
18          print "Usage: summarize_time.py -d directory" 
19          print 
20          print "    Description of command..." 
21          print "         -d     directory" 
22          print "    Optional parameters:" 
23          print "        [-o]    output filename" 
24          print "                      (default is 'summary_of_time')" 
25          print "        [-v]    verbose output" 
26   
27   
28      # process command arguments 
29      try: 
30          opt_list, args = getopt.getopt(sys.argv[1:], 'd:o:vh') 
31      except getopt.GetoptError, msg: 
32          print 'summarize_time.py: %s' %msg 
33          usage() 
34          sys.exit(2) 
35   
36      # initialize required parameters 
37      #-d: directory 
38      directory =  None 
39   
40      # optional parameters 
41      #-o outputfilename 
42      outputfilename = "summary_of_time.txt" 
43      #-v: verbose 
44      verbose = None 
45      #-h: help 
46      help = None 
47   
48   
49      #'d:o:vh' 
50      for o, a in opt_list: 
51          #print "o=", o, " a=", a 
52          if o in ('-d', '--d'): 
53              directory = a 
54              if verbose: print 'set directory to ', a 
55          if o in ('-o', '--o'): 
56              outputfilename = a 
57              if verbose: print 'set outputfilename to ', a 
58          if o in ('-v', '--v'): 
59              verbose = True 
60              if verbose: print 'set verbose to ', True 
61          if o in ('-h', '--'): 
62              usage() 
63              sys.exit() 
64   
65      if not  directory: 
66          print 'summarize_time: directory must be specified.' 
67          usage() 
68          sys.exit() 
69   
70      p = DlgParser() 
71      dlg_list = glob.glob(directory + '/*.dlg') 
72      for dlg in dlg_list: 
73          p.parse(dlg) 
74      stem = dlg_list[0].split('.')[0] 
75      ostr = '%s: % 12.4f m \n' %(directory, p.total_time)  
76      fptr = open(outputfilename, 'a') 
77      fptr.write(ostr) 
78      fptr.close() 
79   
80  # To execute this command type: 
81  # summarize_time.py -d directory -o outputfilename -v 
82