Package AutoDockTools :: Module autoanalyzeCommands :: Class ADShowBindingSite

Class ADShowBindingSite

ViewerFramework.VFCommand.Command --+    
                                    |    
              Pmv.mvCommand.MVCommand --+
                                        |
                                       ADShowBindingSite

This class is used to display docked ligand and surrounding atoms in macromolecule
    
Package : AutoDockTools
    
Module  : autoanalyzeCommands
    
Class   : ADShowBindingSite
    
Command : ADanalyze_showBindingSite 
    
Synopsis:

        None<-ADanalyze_showBindingSite
    
Required Arguments:

        docking: autodock result to display

Instance Methods

[hide private]

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

update_managed_sets(self, event=None)

onRemoveObjectFromViewer(self, obj)

getSSResidues(self, mol)

setupUndoBefore(self, docking)
This method builds the self.undoCmds string.

updateCpk(self)

restoreCpk(self, **kw)

guiCallback(self)
called each time the 'Show Interactions' button is pressed

__call__(self, docking_filename, **kw)
None<-ADanalyze_showBindingSite

revert(self, event=None, **kw)

close(self, event=None, **kw)

save(self, filename=None, event=None)

updatePercentCutoff(self, event=None)

toggleUpdate(self, event=None)

buildDisplayForm(self, event=None)

updateSphereDisplay(self, event=None)

openOtherMM(self, event=None)

printInfo(self, event=None)

print_macro_residue_contacts(self, event=None)

print_ligand_residue_contacts(self, event=None)

print_hydrogen_bonds(self, event=None)

updateMsms(self)

updateHBonds(self)

updateCCCpk(self, event=None)

showHideSecondaryStructure(self)

updateSecondaryStructure(self)

updateMM(self, event=None)

reset(self)

buildLigandDisplay(self)

adjustMsms(self)

buildCloseAtoms(self)

buildHbondDisplay(self)

build(self, percentCutoff=1.)

updatePiCation(self, event=None)

updatePiPi(self, event=None)

updateResLabels(self, event=None)

doit(self, docking_filename, **kw)
virtual method.

Inherited from Pmv.mvCommand.MVCommand: __init__, strArg

Inherited from Pmv.mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, showForm, tkCb, updateGeom, warningMsg

Class Variables