Package AutoDockTools :: Module autodpfCommands :: Class Dpf4InitLigand
[hide private]
[frames] | no frames]

Class Dpf4InitLigand

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ViewerFramework.VFCommand.Command --+    
                                    |    
              Pmv.mvCommand.MVCommand --+
                                        |
                                       Dpf4InitLigand

initializes the ligand for AutoDock4 FIX THIS TO SET TYPES APPROPRIATELY

Instance Methods [hide private]
  onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.
  onRemoveObjectFromViewer(self, obj)
  buildForm(self)
  Accept_cb(self, event=None)
  Close_cb(self, event=None)
  doit(self, *args, **kw)
virtual method.
  getNewGaussTorCts(self, event=None)
  getNewHardTorCts(self, event=None)
  getTorCts(self, event=None)
  getDihe(self, event=None)
  set_barrier(self)
  set_initDiheType(self)
  set_initTransType(self)
  set_initQuatType(self)
  guiCallback(self)
Default callback function called by the gui

Inherited from Pmv.mvCommand.MVCommand: __init__, strArg

Inherited from Pmv.mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __call__, __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

onAddCmdToViewer(self)

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method called when an instance of this command is added to the viewer. This enable viewer-addition time initializations
Overrides: ViewerFramework.VFCommand.Command.onAddCmdToViewer
(inherited documentation)

onRemoveObjectFromViewer(self, obj)

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None

buildForm(self)

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None

Accept_cb(self, event=None)

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None

Close_cb(self, event=None)

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None

doit(self, *args, **kw)

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virtual method. Has to be implemented by the sub classes
Overrides: ViewerFramework.VFCommand.Command.doit
(inherited documentation)

getNewGaussTorCts(self, event=None)

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None

getNewHardTorCts(self, event=None)

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None

getTorCts(self, event=None)

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None

getDihe(self, event=None)

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None

set_barrier(self)

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None

set_initDiheType(self)

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None

set_initTransType(self)

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None

set_initQuatType(self)

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None

guiCallback(self)

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Default callback function called by the gui
Overrides: Pmv.mvCommand.MVCommand.guiCallback