Package AutoDockTools :: Module autoflexCommands :: Class AF_ProcessResidues

Class AF_ProcessResidues

ViewerFramework.VFCommand.Command --+        
                                    |        
              Pmv.mvCommand.MVCommand --+    
                                        |    
       autotorsCommands.SetRotatableBonds --+
                                            |
   ViewerFramework.VFCommand.ICOM --+       |
                                    |       |
                 Pmv.mvCommand.MVICOM --+   |
                                        |   |
                 Pmv.mvCommand.MVBondICOM --+
                                            |
                                           AF_ProcessResidues

allows user to process interactively a set of residues in macromolecule whose sidechains are to be flexed in an autodock run

Instance Methods

[hide private]

__init__(self, func=None)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

guiCallback(self)
called INDIRECTLY each time the 'Choose Torsions in Currently Selected Residues...' button is pressed

close_cb(self, event=None)

setNoAmideTors_cb(self, event=None, log=1, redraw=0)

setNoAmideTors(self, log=0)

turnOffAmides(self)

turnOnAmides(self)

turnOnAmide(self, res)

turnOffAmide(self, res)

buildCol(self, mol, torscount)

changeFlexResCt(self, delta)

checkAromatic_cb(self, event=None)

nameA(self, res)

renameC(self, res)

__call__(self, bonds, **kw)
None <- commandName( *args, **kw)

doit(self, bonds)
virtual method.

stop(self)

getObjects(self, pick)

done_cb(self)

dismiss(self)

Inherited from autotorsCommands.SetRotatableBonds: setNoActiveTors, setNoActiveTors_cb, setNoGuanidiniumTors, setNoGuanidiniumTors_cb, setNoPeptideTors, setNoPeptideTors_cb, setNoSelected, setNoSelected_cb

Inherited from Pmv.mvCommand.MVCommand: strArg

Inherited from Pmv.mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg

Inherited from ViewerFramework.VFCommand.ICOM: initICOM, startICOM, stopICOM

Class Variables

[hide private]

Inherited from autotorsCommands.SetRotatableBonds: form, hasAmide, hasGuan, hasPeptide, hasSelected, running, success, torsStr

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly

Method Details