Package AutoDockTools :: Module autoflexCommands :: Class AF_SetHinge

Class AF_SetHinge

 ViewerFramework.VFCommand.Command --+    
                                     |    
               Pmv.mvCommand.MVCommand --+
                                         |
ViewerFramework.VFCommand.ICOM --+       |
                                 |       |
              Pmv.mvCommand.MVICOM --+   |
                                     |   |
              Pmv.mvCommand.MVAtomICOM --+
                                         |
                                        AF_SetHinge

allows user to setup a hinge interactively to be flexed in an autodock run

Instance Methods

[hide private]

__init__(self, func=None)

getTransformedCoords(self, atom)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

continuousUpdate_cb(self, name, oldval, newval)

update_cb(self, event=None)

update(self, forward=1, event=None)

buildForm(self)

adjustPt_cb(self, event=None)

editAtomsToMove_cb(self, event=None)

getReverseSubtree(self, at1, at2, debug=False)

updateBase(self, val=None)

getSet(self, event=None)

selectTorsions_cb(self, event=None)

clear_cb(self, event=None)

getAllHingeAtoms(self)

removeLastHinge_cb(self, event=None)

clearAll_cb(self, event=None)

hide_xyz(self, event=None)

repack_xyz(self, event=None)

updateHinge(self, event=None)

get_state(self, event=None)

check_torscount(self, atoms)

saveHinge(self, newval, event=None)

setHinge_cb(self, event=None)

setHingePt_cb(self, atoms, event=None)

guiCallback(self)

close_cb(self, event=None)

changeFlexResCt(self, delta)

__call__(self, (atomOne, atomTwo), atoms, **kw)
atomOne: first atom in hinge atomTwo: second atom in hinge atoms: all atoms which will be moved by this hinge

doit(self, (atomOne, atomTwo), atoms, **kw)
atomOne

stop(self)

getObjects(self, pick)
to be implemented by sub-class

done_cb(self)

dismiss(self)

Inherited from Pmv.mvCommand.MVCommand: strArg

Inherited from Pmv.mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg

Inherited from ViewerFramework.VFCommand.ICOM: initICOM, startICOM, stopICOM

Class Variables