Package AutoDockTools :: Module autogpfCommands :: Class GpfInitLigand

Class GpfInitLigand

ViewerFramework.VFCommand.Command --+    
                                    |    
              Pmv.mvCommand.MVCommand --+
                                        |
                                       GpfInitLigand

initializes the ligand:
checkCharges
getTypes
getSideLengths
setAutoDockElements
colorByAtom + color aromatic C's green

GUI allows user to:
    decide which types of hydrogen bonds to model
    modify list of atom types detected in ligand

Instance Methods

[hide private]

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

__call__(self, mol, **kw)
None <- commandName( *args, **kw)

doit(self, mol)
virtual method.

buildForm(self)

Close_cb(self, event=None)

Accept_cb(self, event=None)

showLigand(self, ligand, event=None)

getTypes(self, ligand)
ligand.types<-getTypes(ligand)

updateTypes(self, event=None)

Inherited from Pmv.mvCommand.MVCommand: __init__, guiCallback, strArg

Inherited from Pmv.mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg