Module Hierarchy

• AutoDockTools
• AutoDockTools.AppService_services
• AutoDockTools.AppService_services_types
• AutoDockTools.AutoDockBondClassifier
• AutoDockTools.ConfPlayer: Graphical User Interface to Play AutoDock Conformations which are results of docking experiment
• AutoDockTools.Conformation
• AutoDockTools.DlgParser: This Object parses the result of an AutoDock job and returns a dictionary.
• AutoDockTools.Docking: This Object is the result of an AutoDock job.
• AutoDockTools.DockingParameters
• AutoDockTools.EntropiaParser
• AutoDockTools.EpdbParser: This Object parses the result of an AutoDock command mode epdb operation.
• AutoDockTools.GridParameters
• AutoDockTools.GridParameters_AD4
• AutoDockTools.MoleculePreparation
• AutoDockTools.Objects
• AutoDockTools.ResultParser
• AutoDockTools.TrajParser: This Object parses the result of a trajectory AutoDock run and returns a dictionary.
• AutoDockTools.Utilities24
• AutoDockTools.Utilities24.compute_AutoDock41_score
• AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs
• AutoDockTools.Utilities24.compute_rms_between_methods
• AutoDockTools.Utilities24.dpf3_to_dpf4
• AutoDockTools.Utilities24.energy_average_maps
• AutoDockTools.Utilities24.gpf3_to_gpf4
• AutoDockTools.Utilities24.gpf4_to_gpf3
• AutoDockTools.Utilities24.pdbq_to_pdbqt
• AutoDockTools.Utilities24.pdbqs_to_pdbqt
• AutoDockTools.Utilities24.pdbqt_to_pdb
• AutoDockTools.Utilities24.pdbqt_to_pdbq
• AutoDockTools.Utilities24.pdbqt_to_pdbqs
• AutoDockTools.Utilities24.prepare_dpf
• AutoDockTools.Utilities24.prepare_dpf4
• AutoDockTools.Utilities24.prepare_flexdocking4
• AutoDockTools.Utilities24.prepare_flexreceptor4
• AutoDockTools.Utilities24.prepare_gpf
• AutoDockTools.Utilities24.prepare_gpf4
• AutoDockTools.Utilities24.prepare_ligand
• AutoDockTools.Utilities24.prepare_ligand4
• AutoDockTools.Utilities24.prepare_ligand_dict
• AutoDockTools.Utilities24.prepare_receptor
• AutoDockTools.Utilities24.prepare_receptor4
• AutoDockTools.Utilities24.repair_ligand4
• AutoDockTools.Utilities24.summarize_docking_directory
• AutoDockTools.Utilities24.summarize_results
• AutoDockTools.Utilities24.summarize_results4
• AutoDockTools.Utilities24.summarize_time
• AutoDockTools.Utilities24.summarize_wcg_docking
• AutoDockTools.Utilities24.write_all_complexes
• AutoDockTools.Utilities24.write_clustering_histogram_postscript
• AutoDockTools.Utilities24.write_largest_cluster_ligand
• AutoDockTools.Utilities24.write_lowest_energy_ligand
• AutoDockTools.VisionInterface
• AutoDockTools.VisionInterface.AD3Dpf
• AutoDockTools.VisionInterface.AD3Gpf
• AutoDockTools.VisionInterface.Docking
• AutoDockTools.VisionInterface.PrepareAD3Ligand
• AutoDockTools.VisionInterface.PrepareAD3Receptor
• AutoDockTools.VisionInterface.PrepareAD4Ligand
• AutoDockTools.VisionInterface.recluster
• AutoDockTools.XMLParser: This Object parses the xml result of an AutoDock operation.
• AutoDockTools.adthosts
• AutoDockTools.atomTypeTools: This module implements classes to support AutoDock atomtypes including: NonpolarHydrogenMerger: a class which detects and then merges nonpolarHydrogens with the heavy atoms to which each is bound.
• AutoDockTools.autoanalyzeCommands: This Module facilitates analyzing results of autodock jobs.
• AutoDockTools.autodockHosts
• AutoDockTools.autodpfCommands: This Module facilitates producing a docking parameter file for AutoDock.
• AutoDockTools.autoflexCommands: This Module facilitates producing a files for AutoDock.
• AutoDockTools.autogpfCommands: This Module facilitates producing a grid parameter file for AutoGrid.
• AutoDockTools.autopilotCommands: This Module facilitates the launching of large numbers of AutoDock jobs
• AutoDockTools.autostartCommands: This Module facilitates starting autogrid and autodock jobs and managing them
• AutoDockTools.autotorsCommands: This Module facilitates selecting and formatting a ligand for a subsequent AutoDock run.
• AutoDockTools.cluster: Some definitions: cluster: a list of conformations all within tolerance RMSD.
• AutoDockTools.cluster_ad
• AutoDockTools.cmdlib
• AutoDockTools.energyCalculator: This class calculates the AutoDock internal energy for a set of atoms.
• AutoDockTools.energyConstants
• AutoDockTools.histogram
• AutoDockTools.interactiveHistogramGraph
• AutoDockTools.lib_parameter_file_writer
• AutoDockTools.modlib
• AutoDockTools.pixelMap2D
• AutoDockTools.pyAutoDockCommands: This Module contains commands which allow the user to compute various component pair-wise energies of the autodock305 forcefield and assign the results to individual atoms.
• AutoDockTools.sol_par
• Numeric