Everything
All Classes
AutoDockTools.AppService_services.AppServiceInterface
AutoDockTools.AppService_services.AppServiceLocator
AutoDockTools.AppService_services.AppServicePortSoapBindingSOAP
AutoDockTools.AppService_services.destroyRequest
AutoDockTools.AppService_services.destroyRequestWrapper
AutoDockTools.AppService_services.destroyResponse
AutoDockTools.AppService_services.destroyResponseWrapper
AutoDockTools.AppService_services.getAppConfigRequest
AutoDockTools.AppService_services.getAppConfigRequestWrapper
AutoDockTools.AppService_services.getAppConfigResponse
AutoDockTools.AppService_services.getAppConfigResponseWrapper
AutoDockTools.AppService_services.getAppMetadataRequest
AutoDockTools.AppService_services.getAppMetadataRequestWrapper
AutoDockTools.AppService_services.getAppMetadataResponse
AutoDockTools.AppService_services.getAppMetadataResponseWrapper
AutoDockTools.AppService_services.getOutputAsBase64ByNameRequest
AutoDockTools.AppService_services.getOutputAsBase64ByNameRequestWrapper
AutoDockTools.AppService_services.getOutputAsBase64ByNameResponse
AutoDockTools.AppService_services.getOutputAsBase64ByNameResponseWrapper
AutoDockTools.AppService_services.getOutputsRequest
AutoDockTools.AppService_services.getOutputsRequestWrapper
AutoDockTools.AppService_services.getOutputsResponse
AutoDockTools.AppService_services.getOutputsResponseWrapper
AutoDockTools.AppService_services.launchJobBlockingRequest
AutoDockTools.AppService_services.launchJobBlockingRequestWrapper
AutoDockTools.AppService_services.launchJobBlockingResponse
AutoDockTools.AppService_services.launchJobBlockingResponseWrapper
AutoDockTools.AppService_services.launchJobRequest
AutoDockTools.AppService_services.launchJobRequestWrapper
AutoDockTools.AppService_services.launchJobResponse
AutoDockTools.AppService_services.launchJobResponseWrapper
AutoDockTools.AppService_services.queryStatusRequest
AutoDockTools.AppService_services.queryStatusRequestWrapper
AutoDockTools.AppService_services.queryStatusResponse
AutoDockTools.AppService_services.queryStatusResponseWrapper
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.AppConfigType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.AppMetadataType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ArgumentsType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.BlockingOutputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.FaultType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.FlagsArrayType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.FlagsType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.IOType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ImplicitParamsArrayType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ImplicitParamsType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.InputFileType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.JobInputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.JobOutputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.JobSubOutputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.OutputFileType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.OutputsByNameInputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ParamType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ParamsArrayType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.ParamsType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.StatusOutputType_Def
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.destroyInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.destroyOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getAppConfigOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getAppMetadataOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getOutputAsBase64ByNameInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getOutputAsBase64ByNameOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getOutputsInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.getOutputsOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.launchJobBlockingInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.launchJobBlockingOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.launchJobInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.launchJobOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.opalFaultOutput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.queryStatusInput_Dec
AutoDockTools.AppService_services_types.nbcr_sdsc_edu_opal_types.queryStatusOutput_Dec
AutoDockTools.AutoDockBondClassifier.AutoDockBondClassifier
AutoDockTools.ConfPlayer.ConformationPlayer
AutoDockTools.ConfPlayer.PopulationPlayer
AutoDockTools.Conformation.AutodockState
AutoDockTools.Conformation.Conformation
AutoDockTools.Conformation.ConformationHandler
AutoDockTools.Conformation.PopulationHandler
AutoDockTools.Conformation.State
AutoDockTools.DlgParser.DlgParser
AutoDockTools.Docking.Docking
AutoDockTools.Docking.DockingLogObject
AutoDockTools.DockingParameters.DockingParameter4FileMaker
AutoDockTools.DockingParameters.DockingParameterFileMaker
AutoDockTools.DockingParameters.DockingParameters
AutoDockTools.EntropiaParser.EntropiaParser
AutoDockTools.EpdbParser.EpdbParser
AutoDockTools.GridParameters.GridParameter4FileMaker
AutoDockTools.GridParameters.GridParameterFileMaker
AutoDockTools.GridParameters.GridParameters
AutoDockTools.GridParameters_AD4.GridParameters
AutoDockTools.LigandMixin.LigandMixin
AutoDockTools.MoleculePreparation.AD4FlexibleDockingPreparation
AutoDockTools.MoleculePreparation.AD4FlexibleReceptorPreparation
AutoDockTools.MoleculePreparation.AD4LigandPreparation
AutoDockTools.MoleculePreparation.AD4LigandWriter
AutoDockTools.MoleculePreparation.AD4ReceptorPreparation
AutoDockTools.MoleculePreparation.AD4ReceptorWriter
AutoDockTools.MoleculePreparation.AutoDockMoleculePreparation
AutoDockTools.MoleculePreparation.LigandPreparation
AutoDockTools.MoleculePreparation.LigandWriter
AutoDockTools.MoleculePreparation.ReceptorPreparation
AutoDockTools.MoleculePreparation.ReceptorWriter
AutoDockTools.MoleculePreparation.RotatableBondManager
AutoDockTools.ResultParser.ResultParser
AutoDockTools.TrajParser.TrajParser
AutoDockTools.Utilities24.prepare_dpf.DockingParameterFileMaker
AutoDockTools.Utilities24.prepare_dpf4.DockingParameter4FileMaker
AutoDockTools.Utilities24.prepare_ligand_dict.LigandDictionaryMaker
AutoDockTools.VisionInterface.AD3Dpf.AD3Dpf
AutoDockTools.VisionInterface.AD3Gpf.AD3Gpf
AutoDockTools.VisionInterface.AdtNodes.Add_SolvationParameters
AutoDockTools.VisionInterface.AdtNodes.AdtPrepareDpf3
AutoDockTools.VisionInterface.AdtNodes.AdtPrepareDpf4
AutoDockTools.VisionInterface.AdtNodes.AdtPrepareGpf3
AutoDockTools.VisionInterface.AdtNodes.AdtPrepareGpf4
AutoDockTools.VisionInterface.AdtNodes.Assign_AD4Types
AutoDockTools.VisionInterface.AdtNodes.DockingParameterFileBrowserNE
AutoDockTools.VisionInterface.AdtNodes.GridParameterFileBrowserNE
AutoDockTools.VisionInterface.AdtNodes.Ligand_Writer
AutoDockTools.VisionInterface.AdtNodes.Ligand_Writer_AD4
AutoDockTools.VisionInterface.AdtNodes.ManageAromaticCarbons
AutoDockTools.VisionInterface.AdtNodes.ManageRotatableBonds
AutoDockTools.VisionInterface.AdtNodes.MergeLonePairs
AutoDockTools.VisionInterface.AdtNodes.MergeNonPolarHydrogens
AutoDockTools.VisionInterface.AdtNodes.ReadDockingParameterFile
AutoDockTools.VisionInterface.AdtNodes.ReadGridParameterFile
AutoDockTools.VisionInterface.AdtNodes.RemoveWaters
AutoDockTools.VisionInterface.Docking.Docking
AutoDockTools.VisionInterface.PrepareAD3Ligand.PrepareAD3Ligand
AutoDockTools.VisionInterface.PrepareAD3Receptor.PrepareAD3Receptor
AutoDockTools.VisionInterface.PrepareAD4Ligand.PrepareAD4Ligand
AutoDockTools.VisionInterface.recluster.recluster
AutoDockTools.WebServices.WebServices
AutoDockTools.XMLParser.XMLParser
AutoDockTools.atomTypeTools.AromaticCarbonManager
AutoDockTools.atomTypeTools.AutoDock4_AtomTyper
AutoDockTools.atomTypeTools.LonepairMerger
AutoDockTools.atomTypeTools.NonpolarHydrogenMerger
AutoDockTools.atomTypeTools.SolvationParameterizer
AutoDockTools.autoanalyzeCommands.ADChooseMacro
AutoDockTools.autoanalyzeCommands.ADDeleteDLG
AutoDockTools.autoanalyzeCommands.ADDockingChooser
AutoDockTools.autoanalyzeCommands.ADDrawHistogram
AutoDockTools.autoanalyzeCommands.ADEPDBMol
AutoDockTools.autoanalyzeCommands.ADGetAGrid
AutoDockTools.autoanalyzeCommands.ADGetDLG
AutoDockTools.autoanalyzeCommands.ADGetDirDLGs
AutoDockTools.autoanalyzeCommands.ADGetOutput
AutoDockTools.autoanalyzeCommands.ADMacroLigandChart
AutoDockTools.autoanalyzeCommands.ADMakeAllGrids
AutoDockTools.autoanalyzeCommands.ADReadMacro
AutoDockTools.autoanalyzeCommands.ADSeeSpots
AutoDockTools.autoanalyzeCommands.ADSelectDLG
AutoDockTools.autoanalyzeCommands.ADShowBindingSite
AutoDockTools.autoanalyzeCommands.ClusterDockingChooser
AutoDockTools.autoanalyzeCommands.MakeAutoDockCLUSTERING
AutoDockTools.autoanalyzeCommands.MakeAutoDockSubsetCLUSTERING
AutoDockTools.autoanalyzeCommands.ModelDockingChooser
AutoDockTools.autoanalyzeCommands.ReadAutoDockClusteringStates
AutoDockTools.autoanalyzeCommands.ReadAutoDockStates
AutoDockTools.autoanalyzeCommands.ShowAutoDockClusteringStates
AutoDockTools.autoanalyzeCommands.ShowAutoDockPopulation
AutoDockTools.autoanalyzeCommands.ShowAutoDockStates
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesBaseCmd
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesByEnergy
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesHISTOGRAM
AutoDockTools.autoanalyzeCommands.StatesPlayerWidget
AutoDockTools.autoanalyzeCommands.WriteAutoDockClustering
AutoDockTools.autoanalyzeCommands.WriteAutoDockStates
AutoDockTools.autodockHosts.AutoDockHosts
AutoDockTools.autodpfCommands.Dpf4ClusterWriter
AutoDockTools.autodpfCommands.Dpf4FlexResSelector
AutoDockTools.autodpfCommands.Dpf4GALSWriter
AutoDockTools.autodpfCommands.Dpf4GAWriter
AutoDockTools.autodpfCommands.Dpf4InitLigand
AutoDockTools.autodpfCommands.Dpf4LSWriter
AutoDockTools.autodpfCommands.Dpf4LigPDBQReader
AutoDockTools.autodpfCommands.Dpf4LigandChooser
AutoDockTools.autodpfCommands.Dpf4MacroChooser
AutoDockTools.autodpfCommands.Dpf4MacroSelector
AutoDockTools.autodpfCommands.Dpf4SAWriter
AutoDockTools.autodpfCommands.DpfClusterWriter
AutoDockTools.autodpfCommands.DpfEditor
AutoDockTools.autodpfCommands.DpfGALSWriter
AutoDockTools.autodpfCommands.DpfGAWriter
AutoDockTools.autodpfCommands.DpfInitLigand
AutoDockTools.autodpfCommands.DpfLSWriter
AutoDockTools.autodpfCommands.DpfLigPDBQReader
AutoDockTools.autodpfCommands.DpfLigandChooser
AutoDockTools.autodpfCommands.DpfLoadDefaults
AutoDockTools.autodpfCommands.DpfMacroChooser
AutoDockTools.autodpfCommands.DpfMacroSelector
AutoDockTools.autodpfCommands.DpfSAWriter
AutoDockTools.autodpfCommands.DpfSetDpo
AutoDockTools.autodpfCommands.GA
AutoDockTools.autodpfCommands.LS
AutoDockTools.autodpfCommands.SetAutoDock4Parameters
AutoDockTools.autodpfCommands.SetDockingRunParms
AutoDockTools.autodpfCommands.SimAnneal
AutoDockTools.autodpfCommands.StopAutoDpf
AutoDockTools.autoflexCommands.AF_EditHinge
AutoDockTools.autoflexCommands.AF_FlexFileWriter
AutoDockTools.autoflexCommands.AF_LigandDirectoryWriter
AutoDockTools.autoflexCommands.AF_MacroChooser
AutoDockTools.autoflexCommands.AF_MacroReader
AutoDockTools.autoflexCommands.AF_ProcessHingeResidues
AutoDockTools.autoflexCommands.AF_ProcessResidues
AutoDockTools.autoflexCommands.AF_RigidFileWriter
AutoDockTools.autoflexCommands.AF_SelectResidues
AutoDockTools.autoflexCommands.AF_SetBondRotatableFlag
AutoDockTools.autoflexCommands.AF_SetHinge
AutoDockTools.autoflexCommands.AF_StepBack
AutoDockTools.autogpfCommands.CheckMacroAtomTypes
AutoDockTools.autogpfCommands.DefineNewAtomParms
AutoDockTools.autogpfCommands.Gpf4FlexResChooser
AutoDockTools.autogpfCommands.Gpf4FlexResReader
AutoDockTools.autogpfCommands.Gpf4InitLigand
AutoDockTools.autogpfCommands.Gpf4LigReader
AutoDockTools.autogpfCommands.Gpf4LigandChooser
AutoDockTools.autogpfCommands.Gpf4MacroChooser
AutoDockTools.autogpfCommands.Gpf4MacroInit
AutoDockTools.autogpfCommands.Gpf4MacroReader
AutoDockTools.autogpfCommands.Gpf4ParameterFileSelector
AutoDockTools.autogpfCommands.Gpf4SetAtomTypes
AutoDockTools.autogpfCommands.Gpf4SetMapTypes
AutoDockTools.autogpfCommands.Gpf4Writer
AutoDockTools.autogpfCommands.GpfAddSol
AutoDockTools.autogpfCommands.GpfEditor
AutoDockTools.autogpfCommands.GpfInitLigand
AutoDockTools.autogpfCommands.GpfLigReader
AutoDockTools.autogpfCommands.GpfLigandChooser
AutoDockTools.autogpfCommands.GpfLoadDefaults
AutoDockTools.autogpfCommands.GpfMacroChooser
AutoDockTools.autogpfCommands.GpfMacroInit
AutoDockTools.autogpfCommands.GpfMacroReader
AutoDockTools.autogpfCommands.GpfMergeNonPolarHs
AutoDockTools.autogpfCommands.GpfSetGpo
AutoDockTools.autogpfCommands.GpfWriter
AutoDockTools.autogpfCommands.SelectCenter
AutoDockTools.autogpfCommands.SetBoxParameters
AutoDockTools.autogpfCommands.SetMapTypes
AutoDockTools.autogpfCommands.SetOtherOptions
AutoDockTools.autogpfCommands.SetUpCovalentMap
AutoDockTools.autopilotCommands.ADpilot_Cluster
AutoDockTools.autopilotCommands.ADpilot_ClusterGUICommand
AutoDockTools.autopilotCommands.ADpilot_Template
AutoDockTools.autopilotCommands.ADpilot_TemplateGUICommand
AutoDockTools.autostartCommands.ADKill
AutoDockTools.autostartCommands.ADProcessManager
AutoDockTools.autostartCommands.AddAutoDockHost
AutoDockTools.autostartCommands.AutoDockStarter
AutoDockTools.autostartCommands.AutoGridStarter
AutoDockTools.autostartCommands.AutoStarter
AutoDockTools.autotorsCommands.AUTOTORS4Writer
AutoDockTools.autotorsCommands.AUTOTORSWriter
AutoDockTools.autotorsCommands.Ators4MoleculeChooser
AutoDockTools.autotorsCommands.Ators4Reader
AutoDockTools.autotorsCommands.AtorsInit
AutoDockTools.autotorsCommands.AtorsInitMol
AutoDockTools.autotorsCommands.AtorsMoleculeChooser
AutoDockTools.autotorsCommands.AtorsReader
AutoDockTools.autotorsCommands.AtorsRefWriter
AutoDockTools.autotorsCommands.AutoAutoTors
AutoDockTools.autotorsCommands.AutoRoot
AutoDockTools.autotorsCommands.ChangeAromaticCutOff
AutoDockTools.autotorsCommands.CheckAromatic
AutoDockTools.autotorsCommands.DefiningRotatableBonds
AutoDockTools.autotorsCommands.MarkRoot
AutoDockTools.autotorsCommands.ProcessBonds
AutoDockTools.autotorsCommands.ProcessCharges
AutoDockTools.autotorsCommands.RigidMolecule
AutoDockTools.autotorsCommands.RigidMolecule4
AutoDockTools.autotorsCommands.SelectRoot
AutoDockTools.autotorsCommands.SetBondRotatableFlag
AutoDockTools.autotorsCommands.SetCarbonNames
AutoDockTools.autotorsCommands.SetRotatableBonds
AutoDockTools.autotorsCommands.SetTorsionNumber
AutoDockTools.autotorsCommands.SetTorsionNumberGUICommand
AutoDockTools.autotorsCommands.StopAutoTors
AutoDockTools.autotorsCommands.StopCheckAromatic
AutoDockTools.autotorsCommands.TogglerootSphere
AutoDockTools.cluster.Cluster
AutoDockTools.cluster.Clusterer
AutoDockTools.cluster.Clustering
AutoDockTools.cluster_ad.Clust
AutoDockTools.cluster_ad.Cluster_AD
AutoDockTools.energyCalculator.EnergyCalculator
AutoDockTools.histogram.Histogram
AutoDockTools.histogram.HistogramRI
AutoDockTools.interactiveHistogramGraph.GraphLine
AutoDockTools.interactiveHistogramGraph.GraphObjects
AutoDockTools.interactiveHistogramGraph.GraphPoints
AutoDockTools.interactiveHistogramGraph.HistogramNode
AutoDockTools.interactiveHistogramGraph.HistogramNodeSet
AutoDockTools.interactiveHistogramGraph.InteractiveGraphBuilder
AutoDockTools.interactiveHistogramGraph.InteractiveGraphObject
AutoDockTools.interactiveHistogramGraph.InteractiveHistogramGraph
AutoDockTools.lib_parameter_file_writer.LibraryDpfWriter
AutoDockTools.lib_parameter_file_writer.LibraryGpfWriter
AutoDockTools.pixelMap2D.PixelMap2D
AutoDockTools.pyAutoDockCommands.PyAD305CalcInternalEnergies
AutoDockTools.pyAutoDockCommands.PyAD4CalcAD4Energies
AutoDockTools.pyAutoDockCommands.PyAD4CalcDSOLVEnergies
AutoDockTools.pyAutoDockCommands.PyAD4CalcESTATEnergies
AutoDockTools.pyAutoDockCommands.PyAD4CalcHBONDEnergies
AutoDockTools.pyAutoDockCommands.PyAD4CalcInternalEnergies
AutoDockTools.pyAutoDockCommands.PyAD4CalcVDWEnergies
AutoDockTools.pyAutoDockCommands.PyADCalcAD3Energies
AutoDockTools.pyAutoDockCommands.PyADCalcClosestPairs
AutoDockTools.pyAutoDockCommands.PyADCalcDSOLVEnergies
AutoDockTools.pyAutoDockCommands.PyADCalcESTATEnergies
AutoDockTools.pyAutoDockCommands.PyADCalcHBONDEnergies
AutoDockTools.pyAutoDockCommands.PyADCalcVDWEnergies
float
int
All Functions
AutoDockTools.AutoDockBondClassifier.dist
AutoDockTools.LigandMixin.MixIn
AutoDockTools.LigandMixin.SimpleMixIn
AutoDockTools.Utilities24.compute_AutoDock41_score.check_types
AutoDockTools.Utilities24.compute_AutoDock41_score.usage
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.addAtom
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.buildPdb
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.usage
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.write_grid_map
AutoDockTools.Utilities24.compute_rms_between_methods.dist
AutoDockTools.Utilities24.compute_rms_between_methods.usage
AutoDockTools.Utilities24.dpf3_to_dpf4.usage
AutoDockTools.Utilities24.energy_average_maps.usage
AutoDockTools.Utilities24.gpf3_to_gpf4.usage
AutoDockTools.Utilities24.gpf4_to_gpf3.usage
AutoDockTools.Utilities24.pdbq_to_pdbqt.usage
AutoDockTools.Utilities24.pdbqs_to_pdbqt.usage
AutoDockTools.Utilities24.pdbqt_to_pdb.usage
AutoDockTools.Utilities24.pdbqt_to_pdbq.usage
AutoDockTools.Utilities24.pdbqt_to_pdbqs.usage
AutoDockTools.Utilities24.prepare_dpf.usage
AutoDockTools.Utilities24.prepare_dpf4.usage
AutoDockTools.Utilities24.prepare_flexdocking4.usage
AutoDockTools.Utilities24.prepare_flexreceptor4.usage
AutoDockTools.Utilities24.prepare_gpf.usage
AutoDockTools.Utilities24.prepare_gpf4.usage
AutoDockTools.Utilities24.prepare_ligand.usage
AutoDockTools.Utilities24.prepare_ligand4.usage
AutoDockTools.Utilities24.prepare_ligand_dict.usage
AutoDockTools.Utilities24.prepare_receptor.usage
AutoDockTools.Utilities24.prepare_receptor4.usage
AutoDockTools.Utilities24.repair_ligand4.usage
AutoDockTools.Utilities24.summarize_docking_directory.usage
AutoDockTools.Utilities24.summarize_results.usage
AutoDockTools.Utilities24.summarize_results4.construct_hydrogen_bonds
AutoDockTools.Utilities24.summarize_results4.get_best_energy_info
AutoDockTools.Utilities24.summarize_results4.get_energy_breakdown
AutoDockTools.Utilities24.summarize_results4.get_filename
AutoDockTools.Utilities24.summarize_results4.get_largest_cluster_info
AutoDockTools.Utilities24.summarize_results4.usage
AutoDockTools.Utilities24.summarize_time.usage
AutoDockTools.Utilities24.summarize_wcg_docking.usage
AutoDockTools.Utilities24.write_all_complexes.usage
AutoDockTools.Utilities24.write_clustering_histogram_postscript.usage
AutoDockTools.Utilities24.write_largest_cluster_ligand.usage
AutoDockTools.Utilities24.write_lowest_energy_ligand.usage
AutoDockTools.VisionInterface.AdtNodes.importAdtLib
AutoDockTools.WebServices.initModule
AutoDockTools.autoanalyzeCommands.checkHasInitializedDockings
AutoDockTools.autoanalyzeCommands.checkNameStr
AutoDockTools.autoanalyzeCommands.getCoords_subset
AutoDockTools.autoanalyzeCommands.getRMSD_subset
AutoDockTools.autoanalyzeCommands.get_distance_subset
AutoDockTools.autoanalyzeCommands.hideShowHide
AutoDockTools.autoanalyzeCommands.initModule
AutoDockTools.autoanalyzeCommands.toggleShowHide
AutoDockTools.autodpfCommands.checkHasDpo
AutoDockTools.autodpfCommands.initModule
AutoDockTools.autodpfCommands.setDpoFields
AutoDockTools.autoflexCommands.initModule
AutoDockTools.autogpfCommands.checkFile
AutoDockTools.autogpfCommands.checkHasGpo
AutoDockTools.autogpfCommands.check_autogpf_geoms
AutoDockTools.autogpfCommands.getSideLengths
AutoDockTools.autogpfCommands.initModule
AutoDockTools.autogpfCommands.setAutoDockElements
AutoDockTools.autopilotCommands.initModule
AutoDockTools.autostartCommands.initModule
AutoDockTools.autostartCommands.removePCs
AutoDockTools.autotorsCommands.checkMolCharges
AutoDockTools.autotorsCommands.check_autotors_geoms
AutoDockTools.autotorsCommands.enter_cb
AutoDockTools.autotorsCommands.initLPO
AutoDockTools.autotorsCommands.initLPO4
AutoDockTools.autotorsCommands.initModule
AutoDockTools.autotorsCommands.set_autoMergeNPHS
AutoDockTools.interactiveHistogramGraph.maxBound
AutoDockTools.interactiveHistogramGraph.minBound
AutoDockTools.pyAutoDockCommands.initModule
AutoDockTools.setcmode
AutoDockTools.setdmode
AutoDockTools.startADT
All Variables
AutoDockTools.CRITICAL_DEPENDENCIES
AutoDockTools.DockingParameters.cluster_list
AutoDockTools.DockingParameters.cluster_list4
AutoDockTools.DockingParameters.docking_parameter_list
AutoDockTools.DockingParameters.docking_parameter_list4
AutoDockTools.DockingParameters.docking_parameter_list4_1
AutoDockTools.DockingParameters.dpo
AutoDockTools.DockingParameters.genetic_algorithm_list
AutoDockTools.DockingParameters.genetic_algorithm_list4
AutoDockTools.DockingParameters.genetic_algorithm_list4_1
AutoDockTools.DockingParameters.genetic_algorithm_local_search_list
AutoDockTools.DockingParameters.genetic_algorithm_local_search_list4
AutoDockTools.DockingParameters.genetic_algorithm_local_search_list4_1
AutoDockTools.DockingParameters.genetic_algorithm_local_search_list4_1_with_parameter_file
AutoDockTools.DockingParameters.genetic_algorithm_local_search_list4_with_parameter_file
AutoDockTools.DockingParameters.implemented
AutoDockTools.DockingParameters.local_search_list
AutoDockTools.DockingParameters.local_search_list4
AutoDockTools.DockingParameters.local_search_list4_1
AutoDockTools.DockingParameters.new_dpo
AutoDockTools.DockingParameters.simulated_annealing_list
AutoDockTools.DockingParameters.simulated_annealing_list4
AutoDockTools.DockingParameters.simulated_annealing_list4_1
AutoDockTools.DockingParameters.tmp_filename
AutoDockTools.FlagCheck
AutoDockTools.GridParameters.grid_parameter_list
AutoDockTools.GridParameters.grid_parameter_list4
AutoDockTools.GridParameters_AD4.AD4_grid_parameter_list
AutoDockTools.GridParameters_AD4.gpo
AutoDockTools.GridParameters_AD4.grid_parameter_list
AutoDockTools.GridParameters_AD4.new_gpo
AutoDockTools.GridParameters_AD4.tmp_filename
AutoDockTools.LigandMixin.aromDict
AutoDockTools.LigandMixin.pep_aromList
AutoDockTools.MoleculePreparation.RPO
AutoDockTools.MoleculePreparation.m
AutoDockTools.NONCRITICAL_DEPENDENCIES
AutoDockTools.Objects.h
AutoDockTools.Objects.hostDict
AutoDockTools.Utilities24.compute_AutoDock41_score.ad_scorer
AutoDockTools.Utilities24.compute_AutoDock41_score.exclude_torsFreeEnergy
AutoDockTools.Utilities24.compute_AutoDock41_score.first
AutoDockTools.Utilities24.compute_AutoDock41_score.lig_non_std
AutoDockTools.Utilities24.compute_AutoDock41_score.ligand
AutoDockTools.Utilities24.compute_AutoDock41_score.ligandfilename
AutoDockTools.Utilities24.compute_AutoDock41_score.mode
AutoDockTools.Utilities24.compute_AutoDock41_score.ms
AutoDockTools.Utilities24.compute_AutoDock41_score.non_std_types
AutoDockTools.Utilities24.compute_AutoDock41_score.optr
AutoDockTools.Utilities24.compute_AutoDock41_score.ostr
AutoDockTools.Utilities24.compute_AutoDock41_score.outputfilename
AutoDockTools.Utilities24.compute_AutoDock41_score.parameter_library_filename
AutoDockTools.Utilities24.compute_AutoDock41_score.rec_non_std
AutoDockTools.Utilities24.compute_AutoDock41_score.receptor
AutoDockTools.Utilities24.compute_AutoDock41_score.receptorfilename
AutoDockTools.Utilities24.compute_AutoDock41_score.score
AutoDockTools.Utilities24.compute_AutoDock41_score.supported_types
AutoDockTools.Utilities24.compute_AutoDock41_score.torsEnrg
AutoDockTools.Utilities24.compute_AutoDock41_score.tstr
AutoDockTools.Utilities24.compute_AutoDock41_score.verbose
AutoDockTools.Utilities24.compute_AutoDock41_score.write_file_mode
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.MAPS
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.N
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.RT
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.RTtolerance
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.all_types
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.at_types
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.center
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.ctr
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.d
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.debug
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.dlg_list
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.dockings
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.macroStem
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.maps
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.maxval
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.minval
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.norm_maps
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.npts
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.num_pts
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.nxpts
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.nypts
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.nzpts
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.outputfilename
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.rng
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.spacing
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.tolerance
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.totalEnergy
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.use_all_conformations
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.verbose
AutoDockTools.Utilities24.compute_consensus_maps_from_dlgs.zero_types
AutoDockTools.Utilities24.compute_rms_between_methods.LC_coords
AutoDockTools.Utilities24.compute_rms_between_methods.LE_coords
AutoDockTools.Utilities24.compute_rms_between_methods.c
AutoDockTools.Utilities24.compute_rms_between_methods.clust0
AutoDockTools.Utilities24.compute_rms_between_methods.conf_LC
AutoDockTools.Utilities24.compute_rms_between_methods.coords
AutoDockTools.Utilities24.compute_rms_between_methods.d
AutoDockTools.Utilities24.compute_rms_between_methods.directory
AutoDockTools.Utilities24.compute_rms_between_methods.dist_LC_LC
AutoDockTools.Utilities24.compute_rms_between_methods.dist_LC_LE
AutoDockTools.Utilities24.compute_rms_between_methods.dist_LE_LC
AutoDockTools.Utilities24.compute_rms_between_methods.dist_LE_LE
AutoDockTools.Utilities24.compute_rms_between_methods.dlg_list
AutoDockTools.Utilities24.compute_rms_between_methods.first
AutoDockTools.Utilities24.compute_rms_between_methods.fptr
AutoDockTools.Utilities24.compute_rms_between_methods.largest
AutoDockTools.Utilities24.compute_rms_between_methods.ostr
AutoDockTools.Utilities24.compute_rms_between_methods.outputfilename
AutoDockTools.Utilities24.compute_rms_between_methods.ref_LC_coords
AutoDockTools.Utilities24.compute_rms_between_methods.ref_LE_coords
AutoDockTools.Utilities24.compute_rms_between_methods.ref_d
AutoDockTools.Utilities24.compute_rms_between_methods.ref_dlg_list
AutoDockTools.Utilities24.compute_rms_between_methods.ref_largest
AutoDockTools.Utilities24.compute_rms_between_methods.refdirectory
AutoDockTools.Utilities24.compute_rms_between_methods.rms_LC_LC
AutoDockTools.Utilities24.compute_rms_between_methods.rms_LC_LE
AutoDockTools.Utilities24.compute_rms_between_methods.rms_LE_LC
AutoDockTools.Utilities24.compute_rms_between_methods.rms_LE_LE
AutoDockTools.Utilities24.compute_rms_between_methods.rms_tolerance
AutoDockTools.Utilities24.compute_rms_between_methods.verbose
AutoDockTools.Utilities24.dpf3_to_dpf4.DPO4
AutoDockTools.Utilities24.dpf3_to_dpf4.dpf3_filename
AutoDockTools.Utilities24.dpf3_to_dpf4.ligand_filename
AutoDockTools.Utilities24.dpf3_to_dpf4.outputfilename
AutoDockTools.Utilities24.dpf3_to_dpf4.parameter_list
AutoDockTools.Utilities24.dpf3_to_dpf4.parms
AutoDockTools.Utilities24.dpf3_to_dpf4.receptor_filename
AutoDockTools.Utilities24.dpf3_to_dpf4.res
AutoDockTools.Utilities24.dpf3_to_dpf4.verbose
AutoDockTools.Utilities24.energy_average_maps.all_lines
AutoDockTools.Utilities24.energy_average_maps.all_maps
AutoDockTools.Utilities24.energy_average_maps.all_stems
AutoDockTools.Utilities24.energy_average_maps.all_types
AutoDockTools.Utilities24.energy_average_maps.atomtypes
AutoDockTools.Utilities24.energy_average_maps.fld_fn
AutoDockTools.Utilities24.energy_average_maps.fptr
AutoDockTools.Utilities24.energy_average_maps.lines
AutoDockTools.Utilities24.energy_average_maps.map_stem
AutoDockTools.Utilities24.energy_average_maps.new_fn
AutoDockTools.Utilities24.energy_average_maps.optr
AutoDockTools.Utilities24.energy_average_maps.rt
AutoDockTools.Utilities24.energy_average_maps.stems
AutoDockTools.Utilities24.energy_average_maps.verbose
AutoDockTools.Utilities24.energy_average_maps.xyz_fn
AutoDockTools.Utilities24.gpf3_to_gpf4.GPO4
AutoDockTools.Utilities24.gpf3_to_gpf4.gpf3_filename
AutoDockTools.Utilities24.gpf3_to_gpf4.ligand_filename
AutoDockTools.Utilities24.gpf3_to_gpf4.outputfilename
AutoDockTools.Utilities24.gpf3_to_gpf4.receptor_filename
AutoDockTools.Utilities24.gpf3_to_gpf4.verbose
AutoDockTools.Utilities24.gpf4_to_gpf3.GPO3
AutoDockTools.Utilities24.gpf4_to_gpf3.gpf4_filename
AutoDockTools.Utilities24.gpf4_to_gpf3.ligand_filename
AutoDockTools.Utilities24.gpf4_to_gpf3.outputfilename
AutoDockTools.Utilities24.gpf4_to_gpf3.receptor_filename
AutoDockTools.Utilities24.gpf4_to_gpf3.verbose
AutoDockTools.Utilities24.pdbq_to_pdbqt.AD4_typer
AutoDockTools.Utilities24.pdbq_to_pdbqt.ctr
AutoDockTools.Utilities24.pdbq_to_pdbqt.fptr
AutoDockTools.Utilities24.pdbq_to_pdbqt.mol
AutoDockTools.Utilities24.pdbq_to_pdbqt.mols
AutoDockTools.Utilities24.pdbq_to_pdbqt.pdbq_filename
AutoDockTools.Utilities24.pdbq_to_pdbqt.pdbqt_filename
AutoDockTools.Utilities24.pdbq_to_pdbqt.verbose
AutoDockTools.Utilities24.pdbq_to_pdbqt.writer
AutoDockTools.Utilities24.pdbqs_to_pdbqt.AD4_typer
AutoDockTools.Utilities24.pdbqs_to_pdbqt.charges_to_add
AutoDockTools.Utilities24.pdbqs_to_pdbqt.ctr
AutoDockTools.Utilities24.pdbqs_to_pdbqt.fptr
AutoDockTools.Utilities24.pdbqs_to_pdbqt.mol
AutoDockTools.Utilities24.pdbqs_to_pdbqt.mols
AutoDockTools.Utilities24.pdbqs_to_pdbqt.pdbqs_filename
AutoDockTools.Utilities24.pdbqs_to_pdbqt.pdbqt_filename
AutoDockTools.Utilities24.pdbqs_to_pdbqt.preserve_charge_types
AutoDockTools.Utilities24.pdbqs_to_pdbqt.preserved
AutoDockTools.Utilities24.pdbqs_to_pdbqt.preserved_types
AutoDockTools.Utilities24.pdbqs_to_pdbqt.verbose
AutoDockTools.Utilities24.pdbqs_to_pdbqt.writer
AutoDockTools.Utilities24.pdbqt_to_pdb.mol
AutoDockTools.Utilities24.pdbqt_to_pdb.mols
AutoDockTools.Utilities24.pdbqt_to_pdb.pdb_filename
AutoDockTools.Utilities24.pdbqt_to_pdb.pdbqt_filename
AutoDockTools.Utilities24.pdbqt_to_pdb.verbose
AutoDockTools.Utilities24.pdbqt_to_pdb.writer
AutoDockTools.Utilities24.pdbqt_to_pdbq.ctr
AutoDockTools.Utilities24.pdbqt_to_pdbq.fptr
AutoDockTools.Utilities24.pdbqt_to_pdbq.mol
AutoDockTools.Utilities24.pdbqt_to_pdbq.mols
AutoDockTools.Utilities24.pdbqt_to_pdbq.pdbq_filename
AutoDockTools.Utilities24.pdbqt_to_pdbq.pdbqt_filename
AutoDockTools.Utilities24.pdbqt_to_pdbq.verbose
AutoDockTools.Utilities24.pdbqt_to_pdbq.writer
AutoDockTools.Utilities24.pdbqt_to_pdbqs.ctr
AutoDockTools.Utilities24.pdbqt_to_pdbqs.fptr
AutoDockTools.Utilities24.pdbqt_to_pdbqs.mol
AutoDockTools.Utilities24.pdbqt_to_pdbqs.mols
AutoDockTools.Utilities24.pdbqt_to_pdbqs.pdbqs_filename
AutoDockTools.Utilities24.pdbqt_to_pdbqs.pdbqt_filename
AutoDockTools.Utilities24.pdbqt_to_pdbqs.solparer
AutoDockTools.Utilities24.pdbqt_to_pdbqs.verbose
AutoDockTools.Utilities24.pdbqt_to_pdbqs.writer
AutoDockTools.Utilities24.prepare_dpf.dm
AutoDockTools.Utilities24.prepare_dpf.dpf_filename
AutoDockTools.Utilities24.prepare_dpf.ligand_filename
AutoDockTools.Utilities24.prepare_dpf.parameter_list
AutoDockTools.Utilities24.prepare_dpf.parameters
AutoDockTools.Utilities24.prepare_dpf.receptor_filename
AutoDockTools.Utilities24.prepare_dpf.template_filename
AutoDockTools.Utilities24.prepare_dpf.verbose
AutoDockTools.Utilities24.prepare_dpf4.dm
AutoDockTools.Utilities24.prepare_dpf4.dpf_filename
AutoDockTools.Utilities24.prepare_dpf4.ligand_filename
AutoDockTools.Utilities24.prepare_dpf4.parameter_list
AutoDockTools.Utilities24.prepare_dpf4.parameters
AutoDockTools.Utilities24.prepare_dpf4.pop_seed
AutoDockTools.Utilities24.prepare_dpf4.receptor_filename
AutoDockTools.Utilities24.prepare_dpf4.template_filename
AutoDockTools.Utilities24.prepare_dpf4.verbose
AutoDockTools.Utilities24.prepare_flexdocking4.all_bnds
AutoDockTools.Utilities24.prepare_flexdocking4.all_res
AutoDockTools.Utilities24.prepare_flexdocking4.bnd_pairs
AutoDockTools.Utilities24.prepare_flexdocking4.d
AutoDockTools.Utilities24.prepare_flexdocking4.disallow
AutoDockTools.Utilities24.prepare_flexdocking4.disallowed_pairs
AutoDockTools.Utilities24.prepare_flexdocking4.fdp
AutoDockTools.Utilities24.prepare_flexdocking4.flex_filename
AutoDockTools.Utilities24.prepare_flexdocking4.l
AutoDockTools.Utilities24.prepare_flexdocking4.ligand_filename
AutoDockTools.Utilities24.prepare_flexdocking4.r
AutoDockTools.Utilities24.prepare_flexdocking4.receptor_filename
AutoDockTools.Utilities24.prepare_flexdocking4.res_names
AutoDockTools.Utilities24.prepare_flexdocking4.residues_to_move
AutoDockTools.Utilities24.prepare_flexdocking4.rigid_filename
AutoDockTools.Utilities24.prepare_flexdocking4.verbose
AutoDockTools.Utilities24.prepare_flexreceptor4.all_bnds
AutoDockTools.Utilities24.prepare_flexreceptor4.all_res
AutoDockTools.Utilities24.prepare_flexreceptor4.bnd_pairs
AutoDockTools.Utilities24.prepare_flexreceptor4.d
AutoDockTools.Utilities24.prepare_flexreceptor4.disallow
AutoDockTools.Utilities24.prepare_flexreceptor4.disallowed_pairs
AutoDockTools.Utilities24.prepare_flexreceptor4.fdp
AutoDockTools.Utilities24.prepare_flexreceptor4.flexres_filename
AutoDockTools.Utilities24.prepare_flexreceptor4.r
AutoDockTools.Utilities24.prepare_flexreceptor4.receptor_filename
AutoDockTools.Utilities24.prepare_flexreceptor4.res_names
AutoDockTools.Utilities24.prepare_flexreceptor4.residues_to_move
AutoDockTools.Utilities24.prepare_flexreceptor4.rigid_filename
AutoDockTools.Utilities24.prepare_flexreceptor4.verbose
AutoDockTools.Utilities24.prepare_gpf.gpf_filename
AutoDockTools.Utilities24.prepare_gpf.gpfm
AutoDockTools.Utilities24.prepare_gpf.ligand_filename
AutoDockTools.Utilities24.prepare_gpf.list_filename
AutoDockTools.Utilities24.prepare_gpf.output_gpf_filename
AutoDockTools.Utilities24.prepare_gpf.parameters
AutoDockTools.Utilities24.prepare_gpf.receptor_filename
AutoDockTools.Utilities24.prepare_gpf.verbose
AutoDockTools.Utilities24.prepare_gpf4.directory
AutoDockTools.Utilities24.prepare_gpf4.gpf_filename
AutoDockTools.Utilities24.prepare_gpf4.gpfm
AutoDockTools.Utilities24.prepare_gpf4.ligand_filename
AutoDockTools.Utilities24.prepare_gpf4.list_filename
AutoDockTools.Utilities24.prepare_gpf4.output_gpf_filename
AutoDockTools.Utilities24.prepare_gpf4.parameters
AutoDockTools.Utilities24.prepare_gpf4.receptor_filename
AutoDockTools.Utilities24.prepare_gpf4.verbose
AutoDockTools.Utilities24.prepare_ligand.LPO
AutoDockTools.Utilities24.prepare_ligand.add_bonds
AutoDockTools.Utilities24.prepare_ligand.allowed_bonds
AutoDockTools.Utilities24.prepare_ligand.bonds_to_inactivate
AutoDockTools.Utilities24.prepare_ligand.charges_to_add
AutoDockTools.Utilities24.prepare_ligand.check_for_fragments
AutoDockTools.Utilities24.prepare_ligand.cleanup
AutoDockTools.Utilities24.prepare_ligand.ctr
AutoDockTools.Utilities24.prepare_ligand.dict
AutoDockTools.Utilities24.prepare_ligand.inactivate_all_torsions
AutoDockTools.Utilities24.prepare_ligand.ligand_filename
AutoDockTools.Utilities24.prepare_ligand.mode
AutoDockTools.Utilities24.prepare_ligand.mol
AutoDockTools.Utilities24.prepare_ligand.mols
AutoDockTools.Utilities24.prepare_ligand.outputfilename
AutoDockTools.Utilities24.prepare_ligand.preserve_charge_types
AutoDockTools.Utilities24.prepare_ligand.preserved
AutoDockTools.Utilities24.prepare_ligand.preserved_types
AutoDockTools.Utilities24.prepare_ligand.repairs
AutoDockTools.Utilities24.prepare_ligand.root
AutoDockTools.Utilities24.prepare_ligand.verbose
AutoDockTools.Utilities24.prepare_ligand4.LPO
AutoDockTools.Utilities24.prepare_ligand4.add_bonds
AutoDockTools.Utilities24.prepare_ligand4.allowed_bonds
AutoDockTools.Utilities24.prepare_ligand4.bonds_to_inactivate
AutoDockTools.Utilities24.prepare_ligand4.charges_to_add
AutoDockTools.Utilities24.prepare_ligand4.check_for_fragments
AutoDockTools.Utilities24.prepare_ligand4.cleanup
AutoDockTools.Utilities24.prepare_ligand4.ctr
AutoDockTools.Utilities24.prepare_ligand4.dict
AutoDockTools.Utilities24.prepare_ligand4.inactivate_all_torsions
AutoDockTools.Utilities24.prepare_ligand4.ligand_filename
AutoDockTools.Utilities24.prepare_ligand4.mode
AutoDockTools.Utilities24.prepare_ligand4.mol
AutoDockTools.Utilities24.prepare_ligand4.mols
AutoDockTools.Utilities24.prepare_ligand4.outputfilename
AutoDockTools.Utilities24.prepare_ligand4.preserve_charge_types
AutoDockTools.Utilities24.prepare_ligand4.preserved
AutoDockTools.Utilities24.prepare_ligand4.preserved_types
AutoDockTools.Utilities24.prepare_ligand4.repairs
AutoDockTools.Utilities24.prepare_ligand4.root
AutoDockTools.Utilities24.prepare_ligand4.verbose
AutoDockTools.Utilities24.prepare_ligand_dict.ldm
AutoDockTools.Utilities24.prepare_ligand_dict.ligand_dict_filename
AutoDockTools.Utilities24.prepare_ligand_dict.ligand_filename
AutoDockTools.Utilities24.prepare_ligand_dict.verbose
AutoDockTools.Utilities24.prepare_receptor.RPO
AutoDockTools.Utilities24.prepare_receptor.charges_to_add
AutoDockTools.Utilities24.prepare_receptor.cleanup
AutoDockTools.Utilities24.prepare_receptor.ctr
AutoDockTools.Utilities24.prepare_receptor.delete_single_nonstd_residues
AutoDockTools.Utilities24.prepare_receptor.mode
AutoDockTools.Utilities24.prepare_receptor.mol
AutoDockTools.Utilities24.prepare_receptor.mols
AutoDockTools.Utilities24.prepare_receptor.outputfilename
AutoDockTools.Utilities24.prepare_receptor.preserve_charge_types
AutoDockTools.Utilities24.prepare_receptor.preserved
AutoDockTools.Utilities24.prepare_receptor.preserved_types
AutoDockTools.Utilities24.prepare_receptor.receptor_filename
AutoDockTools.Utilities24.prepare_receptor.repairs
AutoDockTools.Utilities24.prepare_receptor.verbose
AutoDockTools.Utilities24.prepare_receptor4.RPO
AutoDockTools.Utilities24.prepare_receptor4.charges_to_add
AutoDockTools.Utilities24.prepare_receptor4.cleanup
AutoDockTools.Utilities24.prepare_receptor4.ctr
AutoDockTools.Utilities24.prepare_receptor4.delete_single_nonstd_residues
AutoDockTools.Utilities24.prepare_receptor4.mode
AutoDockTools.Utilities24.prepare_receptor4.mol
AutoDockTools.Utilities24.prepare_receptor4.mols
AutoDockTools.Utilities24.prepare_receptor4.outputfilename
AutoDockTools.Utilities24.prepare_receptor4.preserve_charge_types
AutoDockTools.Utilities24.prepare_receptor4.preserved
AutoDockTools.Utilities24.prepare_receptor4.preserved_types
AutoDockTools.Utilities24.prepare_receptor4.receptor_filename
AutoDockTools.Utilities24.prepare_receptor4.repairs
AutoDockTools.Utilities24.prepare_receptor4.verbose
AutoDockTools.Utilities24.repair_ligand4.allAts
AutoDockTools.Utilities24.repair_ligand4.mol
AutoDockTools.Utilities24.repair_ligand4.outputfilename
AutoDockTools.Utilities24.repair_ligand4.pdbqt_filename
AutoDockTools.Utilities24.repair_ligand4.tM
AutoDockTools.Utilities24.repair_ligand4.torscount
AutoDockTools.Utilities24.repair_ligand4.verbose
AutoDockTools.Utilities24.summarize_docking_directory.d
AutoDockTools.Utilities24.summarize_docking_directory.directory
AutoDockTools.Utilities24.summarize_docking_directory.directory_pathname
AutoDockTools.Utilities24.summarize_docking_directory.dlg_pathname_list
AutoDockTools.Utilities24.summarize_docking_directory.docking_name
AutoDockTools.Utilities24.summarize_docking_directory.docking_pathname
AutoDockTools.Utilities24.summarize_docking_directory.dpf_filename
AutoDockTools.Utilities24.summarize_docking_directory.dpf_ligand
AutoDockTools.Utilities24.summarize_docking_directory.dpf_pathname
AutoDockTools.Utilities24.summarize_docking_directory.dpo
AutoDockTools.Utilities24.summarize_docking_directory.fields
AutoDockTools.Utilities24.summarize_docking_directory.gpf_filename
AutoDockTools.Utilities24.summarize_docking_directory.gpf_pathname
AutoDockTools.Utilities24.summarize_docking_directory.gpo
AutoDockTools.Utilities24.summarize_docking_directory.ligand_filename
AutoDockTools.Utilities24.summarize_docking_directory.ligand_pathname
AutoDockTools.Utilities24.summarize_docking_directory.oh
AutoDockTools.Utilities24.summarize_docking_directory.ol
AutoDockTools.Utilities24.summarize_docking_directory.output_filename
AutoDockTools.Utilities24.summarize_docking_directory.output_filepath
AutoDockTools.Utilities24.summarize_docking_directory.output_fileptr
AutoDockTools.Utilities24.summarize_docking_directory.receptor_filename
AutoDockTools.Utilities24.summarize_docking_directory.receptor_pathname
AutoDockTools.Utilities24.summarize_docking_directory.rms_tolerance
AutoDockTools.Utilities24.summarize_docking_directory.seed
AutoDockTools.Utilities24.summarize_docking_directory.verbose
AutoDockTools.Utilities24.summarize_docking_directory.write_to_file
AutoDockTools.Utilities24.summarize_docking_directory.writer
AutoDockTools.Utilities24.summarize_results.ad305scorer
AutoDockTools.Utilities24.summarize_results.append_to_outputfile
AutoDockTools.Utilities24.summarize_results.atDict
AutoDockTools.Utilities24.summarize_results.build_hydrogen_bonds
AutoDockTools.Utilities24.summarize_results.c
AutoDockTools.Utilities24.summarize_results.clust0
AutoDockTools.Utilities24.summarize_results.coords
AutoDockTools.Utilities24.summarize_results.d
AutoDockTools.Utilities24.summarize_results.directory
AutoDockTools.Utilities24.summarize_results.dlg_list
AutoDockTools.Utilities24.summarize_results.fptr
AutoDockTools.Utilities24.summarize_results.hbondBuilder
AutoDockTools.Utilities24.summarize_results.mode
AutoDockTools.Utilities24.summarize_results.ms
AutoDockTools.Utilities24.summarize_results.num_hbonds
AutoDockTools.Utilities24.summarize_results.ostr
AutoDockTools.Utilities24.summarize_results.outputfilename
AutoDockTools.Utilities24.summarize_results.print_best_only
AutoDockTools.Utilities24.summarize_results.receptor
AutoDockTools.Utilities24.summarize_results.receptor_filename
AutoDockTools.Utilities24.summarize_results.report_energy_breakdown
AutoDockTools.Utilities24.summarize_results.rms_tolerance
AutoDockTools.Utilities24.summarize_results.score_list
AutoDockTools.Utilities24.summarize_results.verbose
AutoDockTools.Utilities24.summarize_results4.append_to_outputfile
AutoDockTools.Utilities24.summarize_results4.build_hydrogen_bonds
AutoDockTools.Utilities24.summarize_results4.coords
AutoDockTools.Utilities24.summarize_results4.d
AutoDockTools.Utilities24.summarize_results4.directory
AutoDockTools.Utilities24.summarize_results4.dlg_list
AutoDockTools.Utilities24.summarize_results4.file
AutoDockTools.Utilities24.summarize_results4.first
AutoDockTools.Utilities24.summarize_results4.fptr
AutoDockTools.Utilities24.summarize_results4.mode
AutoDockTools.Utilities24.summarize_results4.num_clusters
AutoDockTools.Utilities24.summarize_results4.ostr
AutoDockTools.Utilities24.summarize_results4.outputfilename
AutoDockTools.Utilities24.summarize_results4.print_Largest_only
AutoDockTools.Utilities24.summarize_results4.print_best_and_Largest_only
AutoDockTools.Utilities24.summarize_results4.print_best_only
AutoDockTools.Utilities24.summarize_results4.receptor
AutoDockTools.Utilities24.summarize_results4.receptor_filename
AutoDockTools.Utilities24.summarize_results4.ref
AutoDockTools.Utilities24.summarize_results4.refCoords
AutoDockTools.Utilities24.summarize_results4.report_energy_breakdown
AutoDockTools.Utilities24.summarize_results4.report_unbound_energy
AutoDockTools.Utilities24.summarize_results4.rms_reference
AutoDockTools.Utilities24.summarize_results4.rms_tolerance
AutoDockTools.Utilities24.summarize_results4.tstr
AutoDockTools.Utilities24.summarize_results4.verbose
AutoDockTools.Utilities24.summarize_time.directory
AutoDockTools.Utilities24.summarize_time.dlg_list
AutoDockTools.Utilities24.summarize_time.fptr
AutoDockTools.Utilities24.summarize_time.help
AutoDockTools.Utilities24.summarize_time.ostr
AutoDockTools.Utilities24.summarize_time.outputfilename
AutoDockTools.Utilities24.summarize_time.p
AutoDockTools.Utilities24.summarize_time.stem
AutoDockTools.Utilities24.summarize_time.verbose
AutoDockTools.Utilities24.summarize_wcg_docking.adscorer
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AutoDockTools.Utilities24.summarize_wcg_docking.atDict
AutoDockTools.Utilities24.summarize_wcg_docking.atom_ct
AutoDockTools.Utilities24.summarize_wcg_docking.build_hydrogen_bonds
AutoDockTools.Utilities24.summarize_wcg_docking.c
AutoDockTools.Utilities24.summarize_wcg_docking.cl
AutoDockTools.Utilities24.summarize_wcg_docking.clust0
AutoDockTools.Utilities24.summarize_wcg_docking.coords
AutoDockTools.Utilities24.summarize_wcg_docking.d
AutoDockTools.Utilities24.summarize_wcg_docking.directory
AutoDockTools.Utilities24.summarize_wcg_docking.fptr
AutoDockTools.Utilities24.summarize_wcg_docking.hbondBuilder
AutoDockTools.Utilities24.summarize_wcg_docking.ligAts
AutoDockTools.Utilities24.summarize_wcg_docking.ligMol
AutoDockTools.Utilities24.summarize_wcg_docking.mode
AutoDockTools.Utilities24.summarize_wcg_docking.ms
AutoDockTools.Utilities24.summarize_wcg_docking.num_hbonds
AutoDockTools.Utilities24.summarize_wcg_docking.ostr
AutoDockTools.Utilities24.summarize_wcg_docking.outputfilename
AutoDockTools.Utilities24.summarize_wcg_docking.p
AutoDockTools.Utilities24.summarize_wcg_docking.print_best_only
AutoDockTools.Utilities24.summarize_wcg_docking.receptor
AutoDockTools.Utilities24.summarize_wcg_docking.receptor_filename
AutoDockTools.Utilities24.summarize_wcg_docking.ref_coords
AutoDockTools.Utilities24.summarize_wcg_docking.report_energy_breakdown
AutoDockTools.Utilities24.summarize_wcg_docking.rms_tolerance
AutoDockTools.Utilities24.summarize_wcg_docking.score_list
AutoDockTools.Utilities24.summarize_wcg_docking.titles
AutoDockTools.Utilities24.summarize_wcg_docking.tors_penalty
AutoDockTools.Utilities24.summarize_wcg_docking.torsion_ct
AutoDockTools.Utilities24.summarize_wcg_docking.total_score
AutoDockTools.Utilities24.summarize_wcg_docking.verbose
AutoDockTools.Utilities24.summarize_wcg_docking.xml_list
AutoDockTools.Utilities24.write_all_complexes.confs
AutoDockTools.Utilities24.write_all_complexes.d
AutoDockTools.Utilities24.write_all_complexes.docking_filename
AutoDockTools.Utilities24.write_all_complexes.output_stem
AutoDockTools.Utilities24.write_all_complexes.receptor_filename
AutoDockTools.Utilities24.write_all_complexes.receptor_lines
AutoDockTools.Utilities24.write_all_complexes.receptor_stem
AutoDockTools.Utilities24.write_all_complexes.rms
AutoDockTools.Utilities24.write_all_complexes.rptr
AutoDockTools.Utilities24.write_all_complexes.verbose
AutoDockTools.Utilities24.write_all_complexes.write_best_only
AutoDockTools.Utilities24.write_clustering_histogram_postscript.confL
AutoDockTools.Utilities24.write_clustering_histogram_postscript.crds
AutoDockTools.Utilities24.write_clustering_histogram_postscript.d
AutoDockTools.Utilities24.write_clustering_histogram_postscript.dataList
AutoDockTools.Utilities24.write_clustering_histogram_postscript.directory
AutoDockTools.Utilities24.write_clustering_histogram_postscript.dlg_list
AutoDockTools.Utilities24.write_clustering_histogram_postscript.e
AutoDockTools.Utilities24.write_clustering_histogram_postscript.elist
AutoDockTools.Utilities24.write_clustering_histogram_postscript.mol
AutoDockTools.Utilities24.write_clustering_histogram_postscript.nodeList
AutoDockTools.Utilities24.write_clustering_histogram_postscript.outputfilename
AutoDockTools.Utilities24.write_clustering_histogram_postscript.r
AutoDockTools.Utilities24.write_clustering_histogram_postscript.rLctr
AutoDockTools.Utilities24.write_clustering_histogram_postscript.reverseList
AutoDockTools.Utilities24.write_clustering_histogram_postscript.rms_tolerance
AutoDockTools.Utilities24.write_clustering_histogram_postscript.s
AutoDockTools.Utilities24.write_clustering_histogram_postscript.top
AutoDockTools.Utilities24.write_clustering_histogram_postscript.tstr
AutoDockTools.Utilities24.write_clustering_histogram_postscript.verbose
AutoDockTools.Utilities24.write_clustering_histogram_postscript.xlabel
AutoDockTools.Utilities24.write_largest_cluster_ligand.clustering
AutoDockTools.Utilities24.write_largest_cluster_ligand.coords
AutoDockTools.Utilities24.write_largest_cluster_ligand.d
AutoDockTools.Utilities24.write_largest_cluster_ligand.dlg_list
AutoDockTools.Utilities24.write_largest_cluster_ligand.largest
AutoDockTools.Utilities24.write_largest_cluster_ligand.lines
AutoDockTools.Utilities24.write_largest_cluster_ligand.outputfilename
AutoDockTools.Utilities24.write_largest_cluster_ligand.parser
AutoDockTools.Utilities24.write_largest_cluster_ligand.rms_tolerance
AutoDockTools.Utilities24.write_largest_cluster_ligand.verbose
AutoDockTools.Utilities24.write_lowest_energy_ligand.conf0
AutoDockTools.Utilities24.write_lowest_energy_ligand.coords
AutoDockTools.Utilities24.write_lowest_energy_ligand.d
AutoDockTools.Utilities24.write_lowest_energy_ligand.dlgfilename
AutoDockTools.Utilities24.write_lowest_energy_ligand.key0
AutoDockTools.Utilities24.write_lowest_energy_ligand.lines
AutoDockTools.Utilities24.write_lowest_energy_ligand.outputfilename
AutoDockTools.Utilities24.write_lowest_energy_ligand.parser
AutoDockTools.Utilities24.write_lowest_energy_ligand.verbose
AutoDockTools.VisionInterface.AdtNodes.adtlib
AutoDockTools.WebServices.WebServicesGUI
AutoDockTools.WebServices.commandList
AutoDockTools.adthosts.hostMacros
AutoDockTools.atomTypeTools.ll
AutoDockTools.atomTypeTools.m
AutoDockTools.atomTypeTools.solP
AutoDockTools.atomTypeTools.writer
AutoDockTools.autoanalyzeCommands.ADChooseMacroGUI
AutoDockTools.autoanalyzeCommands.ADDeleteDLGGUI
AutoDockTools.autoanalyzeCommands.ADDockingChooserGUI
AutoDockTools.autoanalyzeCommands.ADDrawHistogramGUI
AutoDockTools.autoanalyzeCommands.ADEPDBMolGUI
AutoDockTools.autoanalyzeCommands.ADGetAGridGUI
AutoDockTools.autoanalyzeCommands.ADGetDLGGUI
AutoDockTools.autoanalyzeCommands.ADGetDirDLGsGUI
AutoDockTools.autoanalyzeCommands.ADGetOutputGUI
AutoDockTools.autoanalyzeCommands.ADMacroLigandChartGUI
AutoDockTools.autoanalyzeCommands.ADMakeAllGridsGUI
AutoDockTools.autoanalyzeCommands.ADReadMacroGUI
AutoDockTools.autoanalyzeCommands.ADSeeSpotsGUI
AutoDockTools.autoanalyzeCommands.ADSelectDLGGUI
AutoDockTools.autoanalyzeCommands.ADShowBindingSiteGUI
AutoDockTools.autoanalyzeCommands.MakeAutoDockCLUSTERINGGUI
AutoDockTools.autoanalyzeCommands.MakeAutoDockSubsetCLUSTERINGGUI
AutoDockTools.autoanalyzeCommands.ReadAutoDockStatesCLUSTERINGGUI
AutoDockTools.autoanalyzeCommands.ReadAutoDockStatesGUI
AutoDockTools.autoanalyzeCommands.ShowAutoDockPopulationGUI
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesByEnergyGUI
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesCLUSTERINGGUI
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesGUI
AutoDockTools.autoanalyzeCommands.ShowAutoDockStatesHISTOGRAMGUI
AutoDockTools.autoanalyzeCommands.WriteAutoDockClusteringGUI
AutoDockTools.autoanalyzeCommands.WriteAutoDockStatesGUI
AutoDockTools.autoanalyzeCommands.colorsList
AutoDockTools.autoanalyzeCommands.commandList
AutoDockTools.autoanalyzeCommands.i
AutoDockTools.autoanalyzeCommands.menuText
AutoDockTools.autodpfCommands.Dpf4ClusterWriterGUI
AutoDockTools.autodpfCommands.Dpf4FlexResSelectorGUI
AutoDockTools.autodpfCommands.Dpf4GALSWriterGUI
AutoDockTools.autodpfCommands.Dpf4GAWriterGUI
AutoDockTools.autodpfCommands.Dpf4InitLigandGUI
AutoDockTools.autodpfCommands.Dpf4LSWriterGUI
AutoDockTools.autodpfCommands.Dpf4LigPDBQReaderGUI
AutoDockTools.autodpfCommands.Dpf4LigandChooserGUI
AutoDockTools.autodpfCommands.Dpf4MacroChooserGUI
AutoDockTools.autodpfCommands.Dpf4MacroSelectorGUI
AutoDockTools.autodpfCommands.Dpf4SAWriterGUI
AutoDockTools.autodpfCommands.DpfClusterWriterGUI
AutoDockTools.autodpfCommands.DpfEditorGUI
AutoDockTools.autodpfCommands.DpfGALSWriterGUI
AutoDockTools.autodpfCommands.DpfGAWriterGUI
AutoDockTools.autodpfCommands.DpfInitLigandGUI
AutoDockTools.autodpfCommands.DpfLSWriterGUI
AutoDockTools.autodpfCommands.DpfLigPDBQReaderGUI
AutoDockTools.autodpfCommands.DpfLigandChooserGUI
AutoDockTools.autodpfCommands.DpfLoadDefaultsGUI
AutoDockTools.autodpfCommands.DpfMacroChooserGUI
AutoDockTools.autodpfCommands.DpfMacroSelectorGUI
AutoDockTools.autodpfCommands.DpfSAWriterGUI
AutoDockTools.autodpfCommands.GAGUI
AutoDockTools.autodpfCommands.LSGUI
AutoDockTools.autodpfCommands.SetAutoDock4ParametersGUI
AutoDockTools.autodpfCommands.SetDockingRunParmsGUI
AutoDockTools.autodpfCommands.SimAnnealGUI
AutoDockTools.autodpfCommands.commandList
AutoDockTools.autodpfCommands.menuText
AutoDockTools.autodpfCommands.sortKeyList
AutoDockTools.autoflexCommands.AF_EditHingeGUI
AutoDockTools.autoflexCommands.AF_FlexFileWriterGUI
AutoDockTools.autoflexCommands.AF_LigandDirectoryWriterGUI
AutoDockTools.autoflexCommands.AF_MacroChooserGUI
AutoDockTools.autoflexCommands.AF_MacroReaderGUI
AutoDockTools.autoflexCommands.AF_ProcessHingeResiduesGUI
AutoDockTools.autoflexCommands.AF_ProcessResiduesGUI
AutoDockTools.autoflexCommands.AF_RigidFileWriterGUI
AutoDockTools.autoflexCommands.AF_SelectResiduesGUI
AutoDockTools.autoflexCommands.AF_SetHingeGUI
AutoDockTools.autoflexCommands.AF_StepBackGUI
AutoDockTools.autoflexCommands.commandList
AutoDockTools.autoflexCommands.menuText
AutoDockTools.autogpfCommands.DefineNewAtomParmsGUI
AutoDockTools.autogpfCommands.Gpf4FlexResChooserGUI
AutoDockTools.autogpfCommands.Gpf4FlexResReaderGUI
AutoDockTools.autogpfCommands.Gpf4LigReaderGUI
AutoDockTools.autogpfCommands.Gpf4LigandChooserGUI
AutoDockTools.autogpfCommands.Gpf4MacroChooserGUI
AutoDockTools.autogpfCommands.Gpf4MacroReaderGUI
AutoDockTools.autogpfCommands.Gpf4ParameterFileSelectorGUI
AutoDockTools.autogpfCommands.Gpf4SetAtomTypesGUI
AutoDockTools.autogpfCommands.Gpf4SetMapTypesGUI
AutoDockTools.autogpfCommands.Gpf4WriterGUI
AutoDockTools.autogpfCommands.GpfAddSolGUI
AutoDockTools.autogpfCommands.GpfEditorGUI
AutoDockTools.autogpfCommands.GpfLigReaderGUI
AutoDockTools.autogpfCommands.GpfLigandChooserGUI
AutoDockTools.autogpfCommands.GpfLoadDefaultsGUI
AutoDockTools.autogpfCommands.GpfMacroChooserGUI
AutoDockTools.autogpfCommands.GpfMacroReaderGUI
AutoDockTools.autogpfCommands.GpfWriterGUI
AutoDockTools.autogpfCommands.SetBoxParametersGUI
AutoDockTools.autogpfCommands.SetMapTypesGUI
AutoDockTools.autogpfCommands.SetOtherOptionsGUI
AutoDockTools.autogpfCommands.SetUpCovalentMapGUI
AutoDockTools.autogpfCommands.autodockElementDict
AutoDockTools.autogpfCommands.box
AutoDockTools.autogpfCommands.cenCross
AutoDockTools.autogpfCommands.cenSph
AutoDockTools.autogpfCommands.commandList
AutoDockTools.autogpfCommands.coords
AutoDockTools.autogpfCommands.face
AutoDockTools.autogpfCommands.gridOpts
AutoDockTools.autogpfCommands.materials
AutoDockTools.autogpfCommands.menuText
AutoDockTools.autogpfCommands.messages
AutoDockTools.autopilotCommands.ADpilot_ClusterGUI
AutoDockTools.autopilotCommands.ADpilot_TemplateGUI
AutoDockTools.autopilotCommands.commandList
AutoDockTools.autopilotCommands.menuText
AutoDockTools.autostartCommands.ADProcessManagerGUI
AutoDockTools.autostartCommands.AddAutoDockHostGUI
AutoDockTools.autostartCommands.AutoDockStarterGUI
AutoDockTools.autostartCommands.AutoGridStarterGUI
AutoDockTools.autostartCommands.commandList
AutoDockTools.autostartCommands.entropiaPresent
AutoDockTools.autostartCommands.menuText
AutoDockTools.autotorsCommands.AUTOTORS4WriterGUI
AutoDockTools.autotorsCommands.AUTOTORSWriterGUI
AutoDockTools.autotorsCommands.Ators4MoleculeChooserGUI
AutoDockTools.autotorsCommands.Ators4ReaderGUI
AutoDockTools.autotorsCommands.AtorsMoleculeChooserGUI
AutoDockTools.autotorsCommands.AtorsReaderGUI
AutoDockTools.autotorsCommands.AtorsRefWriterGUI
AutoDockTools.autotorsCommands.AutoAutoTorsGUI
AutoDockTools.autotorsCommands.AutoRootGUI
AutoDockTools.autotorsCommands.ChangeAromaticCutOffGUI
AutoDockTools.autotorsCommands.CheckAromaticGUI
AutoDockTools.autotorsCommands.DefiningRotatableBondsGUI
AutoDockTools.autotorsCommands.MAXTORS
AutoDockTools.autotorsCommands.MarkRootGUI
AutoDockTools.autotorsCommands.RigidMolecule4GUI
AutoDockTools.autotorsCommands.RigidMoleculeGUI
AutoDockTools.autotorsCommands.SelectRootGUI
AutoDockTools.autotorsCommands.SetCarbonNamesGUI
AutoDockTools.autotorsCommands.SetTorsionNumberGUICommandGUI
AutoDockTools.autotorsCommands.StopCheckAromaticGUI
AutoDockTools.autotorsCommands.TogglerootSphereGUI
AutoDockTools.autotorsCommands.autoMergeNPHS
AutoDockTools.autotorsCommands.charge_errorfile
AutoDockTools.autotorsCommands.commandList
AutoDockTools.autotorsCommands.markSph
AutoDockTools.autotorsCommands.menuText
AutoDockTools.autotorsCommands.rootSph
AutoDockTools.autotorsCommands.warningText
AutoDockTools.cmdlib.cmdlist
AutoDockTools.energyConstants.FE_desol_coeff
AutoDockTools.energyConstants.FE_estat_coeff
AutoDockTools.energyConstants.FE_hbond_coeff
AutoDockTools.energyConstants.FE_tors_coeff
AutoDockTools.energyConstants.FE_vdW_coeff
AutoDockTools.energyConstants.Rij
AutoDockTools.energyConstants.SolCon
AutoDockTools.energyConstants.SolPar
AutoDockTools.energyConstants.SolVol
AutoDockTools.energyConstants.epsij
AutoDockTools.h
AutoDockTools.histogram.data
AutoDockTools.histogram.hRI
AutoDockTools.hostDict
AutoDockTools.interactiveHistogramGraph.ehist
AutoDockTools.interactiveHistogramGraph.histNB
AutoDockTools.interactiveHistogramGraph.nodeList
AutoDockTools.interactiveHistogramGraph.reverseIndex
AutoDockTools.interactiveHistogramGraph.root
AutoDockTools.modlib.modlist
AutoDockTools.pixelMap2D.r
AutoDockTools.pixelMap2D.rw_half_w
AutoDockTools.pixelMap2D.rw_w
AutoDockTools.pixelMap2D.rwb_half_w
AutoDockTools.pixelMap2D.rwb_w
AutoDockTools.pixelMap2D.s_r
AutoDockTools.pixelMap2D.s_r_w
AutoDockTools.pyAutoDockCommands.PyAD305CalcInternalEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcAD4EnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcDSOLVEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcESTATEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcHBONDEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcInternalEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyAD4CalcVDWEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyADCalcAD3EnergiesGUI
AutoDockTools.pyAutoDockCommands.PyADCalcClosestPairsGUI
AutoDockTools.pyAutoDockCommands.PyADCalcDSOLVEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyADCalcESTATEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyADCalcHBONDEnergiesGUI
AutoDockTools.pyAutoDockCommands.PyADCalcVDWEnergiesGUI
AutoDockTools.pyAutoDockCommands.commandList
AutoDockTools.pyAutoDockCommands.parentGeom
AutoDockTools.pyAutoDockCommands.pep_aromList
AutoDockTools.sol_par.solvs
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