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# Class FindGap

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 Instance Methods
` ` __init__(self, mat, chain, atoms=[])
None<--FindGap(matrix,chain) matrix :transformed coords chain:mol.chain atoms:a set of ca atoms This function computes distances between atoms ,sd ,max distance .If distance between any two atoms are greater than max then there is a gap between that residues
` ` Gapfunction(self, mat, mol, atoms=[])
` ` measure_distance(self, mat)
This function calls measure distance command and return distances between atoms
` ` standarddeviation_of_distances(self, distances, mean=None)
This function computes standard deviations of distances between atoms list given
` ` compute_max_min(self, mean, distances, mat, mol, atoms=[])
This function computes max and min value and finds the atoms where distance between them is more than max and residues which are not connected

 Method Details

### __init__(self, mat, chain, atoms=[])(Constructor)

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None<--FindGap(matrix,chain) matrix :transformed coords chain:mol.chain atoms:a set of ca atoms This function computes distances between atoms ,sd ,max distance .If distance between any two atoms are greater than max then there is a gap between that residues

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None

### measure_distance(self, mat)

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This function calls measure distance command and return distances between atoms

### standarddeviation_of_distances(self, distances, mean=None)

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This function computes standard deviations of distances between atoms list given

### compute_max_min(self, mean, distances, mat, mol, atoms=[])

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This function computes max and min value and finds the atoms where distance between them is more than max and residues which are not connected

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