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__init__(self,
mat,
chain,
atoms=[])
None<--FindGap(matrix,chain) matrix :transformed coords
chain:mol.chain atoms:a set of ca atoms This function computes
distances between atoms ,sd ,max distance .If distance between any
two atoms are greater than max then there is a gap between that
residues
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Gapfunction(self,
mat,
mol,
atoms=[])
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measure_distance(self,
mat)
This function calls measure distance command and return distances
between atoms
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standarddeviation_of_distances(self,
distances,
mean=None)
This function computes standard deviations of distances between
atoms list given
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compute_max_min(self,
mean,
distances,
mat,
mol,
atoms=[])
This function computes max and min value and finds the atoms where
distance between them is more than max and residues which are not
connected
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