Package MolKit :: Module getsecondarystructure

Module getsecondarystructure

source code

This module implements the classes GetSecondaryStructure, GetSecondaryStructureFromFile, GetSecondaryStructureWeb, These classes are expected to be specialized in getting the informations on the secondary Structure of a protein and create a secondarystructureset for a chain

Classes

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GetSecondaryStructure
Base class to get the datas of secondary structure of a molecule..

GetSecondaryStructureFromFile
class to extend GetSecondaryStructure with specific methods to get informations on the secondary structure from files (PDB file, MOL2) and build the equivalent nodes for the molecule..

GetSecondaryStructureFromStride
class to extend GetSecondaryStructure with specific methods to get informations on the secondary structure from the output of STRIDE