Package MolKit :: Package pdb2pqr :: Package src :: Module pdb :: Class HYDBND
[hide private]
[frames] | no frames]

Class HYDBND

source code

HYDBND field

The HYDBND records specify hydrogen bonds in the entry.

Instance Methods [hide private]
  __init__(self, line)
Initialize by parsing line COLUMNS TYPE FIELD DEFINITION ----------------------------------------------------------- 13-16 string name1 Atom name.

Method Details [hide private]

__init__(self, line)
(Constructor)

source code 

Initialize by parsing line

COLUMNS  TYPE   FIELD  DEFINITION
-----------------------------------------------------------
13-16    string name1          Atom name.
17       string altLoc1        Alternate location indicator.
18-20    string resName1       Residue name.
22       string Chain1         Chain identifier.
23-27    int    resSeq1        Residue sequence number.
28       string ICode1         Insertion code.
30-33    string nameH          Hydrogen atom name.
34       string altLocH        Alternate location indicator.
36       string ChainH         Chain identifier.
37-41    int    resSeqH        Residue sequence number.
42       string iCodeH         Insertion code.
44-47    string name2          Atom name.
48       string altLoc2        Alternate location indicator.
49-51    string resName2       Residue name.
53       string chainID2       Chain identifier.
54-58    int    resSeq2        Residue sequence number.
59       string iCode2         Insertion code.
60-65    string sym1           Symmetry operator for 1st
                                              non-hydrogen atom.
67-72    string sym2           Symmetry operator for 2nd
                                  non-hydrogen atom.