Package MolKit :: Package pdb2pqr :: Package src :: Module pdb :: Class SIGATM
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Class SIGATM

source code

SIGATM class

The SIGATM records present the standard deviation of atomic parameters as they appear in ATOM and HETATM records.

Instance Methods [hide private]
  __init__(self, line)
Initialize by parsing line COLUMNS TYPE FIELD DEFINITION --------------------------------------------- 7-11 int serial Atom serial number.

Method Details [hide private]

__init__(self, line)
(Constructor)

source code 

Initialize by parsing line

COLUMNS  TYPE   FIELD    DEFINITION
---------------------------------------------
7-11      int   serial   Atom serial number.
13-16     string name    Atom name.
17        string altLoc  Alternate location indicator.
18-20     string resName Residue name.
22        string chainID Chain identifier.
23-26     int    resSeq  Residue sequence number.
27        string iCode   Code for insertion of residues.
31-38     float  sigX    Standard devition of orthogonal
                         coordinates for X in Angstroms.
39-46     float  sigY    Standard devition of orthogonal
                         coordinates for Y in Angstroms.
47-54     float  sigZ    Standard devition of orthogonal
                         coordinates for Z in Angstroms.
55-60     float  sigOcc  Standard devition of occupancy.
61-66     float  sigTemp Standard devition of temperature factor.
73-76     string segID   Segment identifier, left-justified.
77-78     string element Element symbol, right-justified.
79-80     string charge  Charge on the atom.