Package MolKit :: Package pdb2pqr :: Package src :: Module pdb :: Class SITE
[hide private]
[frames] | no frames]

Class SITE

source code

SITE class

The SITE records supply the identification of groups comprising important sites in the macromolecule.

Instance Methods [hide private]
  __init__(self, line)
Initialize by parsing the line COLUMNS TYPE FIELD DEFINITION -------------------------------------------------------------- 8-10 int seqNum Sequence number.

Method Details [hide private]

__init__(self, line)
(Constructor)

source code 

Initialize by parsing the line

COLUMNS  TYPE   FIELD    DEFINITION
--------------------------------------------------------------
 8-10    int    seqNum   Sequence number.
12-14    string siteID   Site name.
16-17    int    numRes   Number of residues comprising site.
19-21    string resName1 Residue name for first residue
                         comprising site.
23       string chainID1 Chain identifier for first residue
                         comprising site.
24-27    int    seq1     Residue sequence number for first
                         residue comprising site.
28       string iCode1   Insertion code for first residue
                         comprising site.
30-32    string resName2 Residue name for second residue
                         comprising site.
34       string chainID2 Chain identifier for second residue
                         comprising site.
35-38    int    seq2     Residue sequence number for second
                         residue comprising site.
39       string iCode2   Insertion code for second residue
                         comprising site.
41-43    string resName3 Residue name for third residue
                         comprising site.
45       string chainID3 Chain identifier for third residue
                         comprising site.
46-49    int    seq3     Residue sequence number for third
                         residue comprising site.
50       string iCode3   Insertion code for third residue
                         comprising site.
52-54    string resName4 Residue name for fourth residue
                         comprising site.
56       string chainID4 Chain identifier for fourth residue
                         comprising site.
57-60    int    seq4     Residue sequence number for fourth
                         residue comprising site.
61       string iCode4   Insertion code for fourth residue
                         comprising site.