Package Pmv

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Package Pmv

Submodules

Pmv.APBSCommands: GUI for Adaptive Poisson-Boltzmann Solver Minimal documentation follows.
Pmv.APBSService_services
Pmv.APBSService_services_types
Pmv.Grid
Pmv.NucleicBases
Pmv.Ribbon
Pmv.SLCommands
Pmv.SecuritymyproxyloginImplService_services
Pmv.SecurityuserimportImplService_services
Pmv.VisionInterface

Pmv.VisionInterface.PmvNodes
Pmv.VisionInterface.PmvTypes

Pmv.aboutCommands
Pmv.amberCommands
Pmv.bondsCommands
Pmv.cmdlib
Pmv.colorCommands: This Module implements commands to color the current selection different ways.
Pmv.colorMap
Pmv.colorPalette
Pmv.colorPaletteCommands
Pmv.computeIsovalue
Pmv.controlPanelCommands
Pmv.dashboard
Pmv.dashboardCommands
Pmv.deleteCommands: ...
Pmv.displayCommands
Pmv.editCommands
Pmv.extruder
Pmv.extrusionCommands
Pmv.fileCommands: ...
Pmv.genparserCommands
Pmv.gridCommands: This Module implements commands to read grid data, to visualize isosurfaces, to manipulate orthoslices through the isosurfaces...
Pmv.guiTools: ...
Pmv.hbondCommands
Pmv.helpCommands: Module implementing classes to provide documentation on the application
Pmv.interactiveCommands
Pmv.labelCommands: This Module implements commands to label the current selection different ways.
Pmv.measureCommands
Pmv.modlib
Pmv.moleculeViewer
Pmv.msmsCommands
Pmv.msmsParser
Pmv.mvCommand
Pmv.picker
Pmv.pmvPalettes
Pmv.povrayCommands
Pmv.qkollRes
Pmv.qkollua
Pmv.repairCommands
Pmv.sdCommands
Pmv.secondaryStructureCommands
Pmv.selectionCommands
Pmv.setangleCommands
Pmv.splineCommands
Pmv.stringSelectorGUI
Pmv.superImposeCommands
Pmv.superimposeCommandsNew
Pmv.traceCommands: Module for Compute,Extrude and Display Trace.
Pmv.trajectoryCommands
Pmv.updateCommands
Pmv.vectfieldCommands
Pmv.videoCommands
Pmv.visionCommands
Pmv.writeMsmsAsCommands

Functions

setdmode(mode, mv)
load display commands for mode and set them as default command for new molecule

setcmode(mode, mv)
load color commands for mode and set them as default command for new molecule

ed()

net()

nodes()

startPMV(argv, PmvScriptPath)
The main function for running PMV

Variables

FlagCheck = 1

CRITICAL_DEPENDENCIES = ['Numeric', 'Pmw', 'mglutil', 'ViewerFramework', 'Mo...

NONCRITICAL_DEPENDENCIES = ['ZSI', 'geomutils', 'UTpackages', 'SpatialLogic', '...

Function Details

setdmode(mode, mv)

load display commands for mode and set them as default command for new molecule

setcmode(mode, mv)

load color commands for mode and set them as default command for new molecule

ed()	source code

None

net()

None

nodes()

None

startPMV(argv, PmvScriptPath)

The main function for running PMV

Variables Details

FlagCheck

None

Value:

CRITICAL_DEPENDENCIES

None

Value:

['Numeric',
 'Pmw',
 'mglutil',
 'ViewerFramework',
 'MolKit',
 'DejaVu',
 'opengltk']

NONCRITICAL_DEPENDENCIES

None

Value:

['ZSI',
 'geomutils',
 'UTpackages',
 'SpatialLogic',
 'bhtree',
 'sff',
 'PyBabel',
 'Volume',
...