Package Pmv :: Module APBSCommands :: Class APBSPreferences
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Class APBSPreferences

source code

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       APBSPreferences

APBSPreferences allows to change APBS Preferences

    
Package : Pmv
    
Module  : APBSCommands
    
Class   : APBSPreferences
    
Command name : APBSPreferences
    
Synopsis:

    None <---  APBSPreferences(APBS_Path = None, pdb2pqr_Path = None, ff = None,
debump = None, hopt = None, hdebump = None, watopt = None)
    
Optional Arguments:
  
        APBS_Path -- path to abps executable
        pdb2pqr_Path -- path to pdb2pqr.py script
        ff -- Force Field for pdb2pqr ('amber', 'charmm' or 'parse')
        nodebump    :  Do not perform the debumping operation
        nohopt      :  Do not perform hydrogen optimization
        nohdebump   :  Do not perform hydrogen debumping
        nowatopt    :  Do not perform water optimization
     



Instance Methods [hide private]
  doit(self, APBS_Path=None, pdb2pqr_Path=None, ff=None, nodebump=False, nohopt=False)
...
  __init__(self)
  guiCallback(self)
GUI Callback for APBSPreferences
  set_APBS_Path(self)
Sets APBS Path
  set_pdb2pqr_Path(self)
Sets pdb2pqr Path

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __call__, __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddCmdToViewer, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

doit(self, APBS_Path=None, pdb2pqr_Path=None, ff=None, nodebump=False, nohopt=False)

source code 

        doit function for APBSPreferences class
       
Optional Arguments:
  
        APBS_Path -- path to abps executable
        pdb2pqr_Path -- path to pdb2pqr.py script
        ff -- Force Field for pdb2pqr ('amber', 'charmm' or 'parse')
        nodebump    :  Do not perform the debumping operation
        nohopt      :  Do not perform hydrogen optimization
        nohdebump   :  Do not perform hydrogen debumping
        nowatopt    :  Do not perform water optimization
        

Overrides: ViewerFramework.VFCommand.Command.doit

__init__(self)
(Constructor)

source code 
None
Overrides: mvCommand.MVCommand.__init__

guiCallback(self)

source code 
GUI Callback for APBSPreferences
Overrides: mvCommand.MVCommand.guiCallback

set_APBS_Path(self)

source code 
Sets APBS Path

set_pdb2pqr_Path(self)

source code 
Sets pdb2pqr Path