Package Pmv :: Module APBSCommands :: Class APBSRun
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Class APBSRun

source code

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       APBSRun

APBSRun runs Adaptive Poisson-Boltzmann Solver (APBS)

    
Package : Pmv
    
Module  : APBSCommands
    
Class   : APBSRun
    
Command name : APBSRun
    
Synopsis:

    None <--- APBSRun(molName, APBSParamName = "Default", **kw)
    
Optional Arguments:

        molecule1 - name of the molecule1
        molecule2 - name of the molecule2
        complex - name of the complex
        APBSParamName - Name of the key in mol.APBSParams dictionary
    



Instance Methods [hide private]
  onAddCmdToViewer(self)
Called when APBSRun is loaded
  onAddObjectToViewer(self, object)
Called when object is added to viewer
  onRemoveObjectFromViewer(self, object)
Called when object is removed from viewer
  guiCallback(self)
GUI callback
  __call__(self, molecule1=None, molecule2=None, _complex=None, APBSParamName='Default', **kw)
None <--- APBSRun(nodes, **kw)...
  copyFix(self, fileSource, fileDest)
Copies a file from fileSource to fileDest and fixes end-of-lines
  doit(self, molecule1=None, molecule2=None, _complex=None, APBSParamName='Default')
doit function

Inherited from mvCommand.MVCommand: __init__, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

onAddCmdToViewer(self)

source code 
Called when APBSRun is loaded
Overrides: ViewerFramework.VFCommand.Command.onAddCmdToViewer

onAddObjectToViewer(self, object)

source code 
Called when object is added to viewer

onRemoveObjectFromViewer(self, object)

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Called when object is removed from viewer

guiCallback(self)

source code 
GUI callback
Overrides: mvCommand.MVCommand.guiCallback

__call__(self, molecule1=None, molecule2=None, _complex=None, APBSParamName='Default', **kw)
(Call operator)

source code 
None <--- APBSRun(nodes, **kw)

            
Optional Arguments :

              molecule1 - name of the molecule1
              molecule2 - name of the molecule2
              complex - name of the complex
              APBSParamName = Name of the key in mol.APBSParams dictionary
        

Overrides: ViewerFramework.VFCommand.Command.__call__

copyFix(self, fileSource, fileDest)

source code 
Copies a file from fileSource to fileDest and fixes end-of-lines

doit(self, molecule1=None, molecule2=None, _complex=None, APBSParamName='Default')

source code 
doit function
Overrides: ViewerFramework.VFCommand.Command.doit