Package Pmv :: Package VisionInterface :: Module APBSPot2MSMS_net
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Module APBSPot2MSMS_net

source code

Variables [hide private]
  Pmv_0 = None
  Get_MSMS_Geom_1 = None
  Choose_Molecule_3 = None
  Offset_9 = Map_Pot_On_Geom_4.macroNetwork.nodes [4]
  call_method_13 = Map_Pot_On_Geom_4.macroNetwork.nodes [8]
  Get_viewer_17 = Map_Pot_On_Geom_4.macroNetwork.nodes [12]
  Slice_Data_18 = Map_Pot_On_Geom_4.macroNetwork.nodes [13]
  Generic_22 = Generic(constrkw= {}, name= 'Generic', library= stdlib)
  code = """def doit(self, geom, colors): geomC = geom.mol.ge...
  Color_Map_12 = Map_Pot_On_Geom_4.macroNetwork.nodes [7]
  input_Ports_5 = Map_Pot_On_Geom_4.macroNetwork.ipNode
  Map_Pot_On_Geom_4 = None
  Pmv_Viewer_23 = None
  Pmv_Grids_24 = None

Variables Details [hide private]

Pmv_0

None
Value:
None                                                                  
      

Get_MSMS_Geom_1

None
Value:
None                                                                  
      

Choose_Molecule_3

None
Value:
None                                                                  
      

Offset_9

None
Value:
Map_Pot_On_Geom_4.macroNetwork.nodes [4]                               
      

call_method_13

None
Value:
Map_Pot_On_Geom_4.macroNetwork.nodes [8]                               
      

Get_viewer_17

None
Value:
Map_Pot_On_Geom_4.macroNetwork.nodes [12]                              
      

Slice_Data_18

None
Value:
Map_Pot_On_Geom_4.macroNetwork.nodes [13]                              
      

Generic_22

None
Value:
Generic(constrkw= {}, name= 'Generic', library= stdlib)                
      

code

None
Value:
"""def doit(self, geom, colors):
    geomC = geom.mol.geomContainer
    surfName = geom.userName
    geom.apbs_colors = colors
    surf = geomC.msms[surfName][0]
    surfName = geom.userName
    surfNum = geomC.msms[surfName][1]
    atomIndices = []
...                                                                    
      

Color_Map_12

None
Value:
Map_Pot_On_Geom_4.macroNetwork.nodes [7]                               
      

input_Ports_5

None
Value:
Map_Pot_On_Geom_4.macroNetwork.ipNode                                  
      

Map_Pot_On_Geom_4

None
Value:
None                                                                  
      

Pmv_Viewer_23

None
Value:
None                                                                  
      

Pmv_Grids_24

None
Value:
None