Package Pmv :: Package VisionInterface :: Module PmvNodes :: Class GetMSMSGeom
[hide private]
[frames] | no frames]

Class GetMSMSGeom

source code

                             object --+                
                                      |                
NetworkEditor.itemBase.NetworkItemsBase --+            
                                          |            
        NetworkEditor.itemBase.NetworkItems --+        
                                              |        
            NetworkEditor.items.NetworkNodeBase --+    
                                                  |    
                    NetworkEditor.items.NetworkNode --+
                                                      |
                                                     GetMSMSGeom

Get a handle to an MSMS surface geometry for a molecule loaded in PMV

Input:
    molecule: the molecule for which we want a handle to a surface
    surfaceName: the name of the surface we want
Output:
    msmsGeom: an IndexedPolygons geometry corresponding to an MSMS surface
              calculated in PMV



Instance Methods [hide private]
  __init__(self, constrkw={}, name='Get MSMS Geom', **kw)
  beforeAddingToNetwork(self, net)

Inherited from NetworkEditor.items.NetworkNode: addInputPort, addOutputPort, addSpecialPorts, buildNodeIcon, buildSmallIcon, deletePort, deletePortByName, deleteSmallIcon, deselect, editorVisible, getColor, getFont, hideSpecialPorts, isExpanded, refreshInputPortData, resizeIcon, select, setColor, setFont, setModifiedTag, setProgressBar, showSpecialPorts, updatePosXPosY

Inherited from NetworkEditor.items.NetworkNodeBase: addSaveNodeMenuEntries, autoResize, autoResizeX, autoResizeY, buildIcons, checkIfNodeForSavingIsDefined, compareToOrigNodeDescr, computeFunction, configure, cut_cb, delete_cb, edit, editComputeFunction_cb, evalString, getAfterConnectionsSourceCode, getComputeFunctionSourceCode, getConnections, getDescr, getHeaderBlock, getInConnections, getInitBlock, getInputPortByName, getNodeDefinitionSourceCode, getNodeSourceCode, getNodeSourceCodeForDoit, getNodeSourceCodeForInstanciation, getNodeSourceCodeForModifications, getNodeSourceCodeForNode, getNodeSourceCodeForPorts, getNodeSourceCodeForWidgetValue, getNodeSourceCodeForWidgets, getOutConnections, getOutputPortByName, getOutputPortByType, getPortsCreationSourceCode, getSize, getSourceCode, getSpecialInputPortByName, getSpecialOutputPortByName, getStateDefinitionCode, getUniqueNodeName, getWidgetByName, getWidgetsCreationSourceCode, getWidgetsForMaster, getWidthForLabel, getWidthForNodeWidgets, getWidthForPorts, growDown, growRight, hideInNodeWidgets, isMacro, isModified, ischild, move, moveSelectedNodeEnd, outputData, rename, resetModifiedTag, resetTags, safeName, saveSource, saveSource_cb, schedule, scheduleChildren, schedule_cb, setFunction, showInNodeWidgets, startMoveOneNode, toggleNodeExpand_cb, toggleParamPanel_cb, updateCode

Inherited from NetworkEditor.itemBase.NetworkItems: __repr__, afterAddingToNetwork, afterRemovingFromNetwork, beforeRemovingFromNetwork, deleteIcon, editNodeMenu, freeze, gettags, hideParamPanel, highlight, introspect, postItemMenu, run, toggleAutoRun_cb, toggleFrozen_cb, unfreeze, unhighlight

Inherited from NetworkEditor.itemBase.NetworkItems (private): _introspectCB

Inherited from NetworkEditor.itemBase.NetworkItemsBase: delEditor, getEditor, setEditor

Inherited from NetworkEditor.itemBase.NetworkItemsBase (private): _setModified, _setOriginal

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __str__


Properties [hide private]

Inherited from NetworkEditor.itemBase.NetworkItemsBase: editor

Inherited from object: __class__


Method Details [hide private]

__init__(self, constrkw={}, name='Get MSMS Geom', **kw)
(Constructor)

source code 
None
Overrides: NetworkEditor.items.NetworkNode.__init__

beforeAddingToNetwork(self, net)

source code 
None
Overrides: NetworkEditor.itemBase.NetworkItems.beforeAddingToNetwork