Package Pmv :: Module bondsCommands :: Class AddBondsGUICommand

Class AddBondsGUICommand

 ViewerFramework.VFCommand.Command --+    
                                     |    
                   mvCommand.MVCommand --+
                                         |
ViewerFramework.VFCommand.ICOM --+       |
                                 |       |
                  mvCommand.MVICOM --+   |
                                     |   |
                  mvCommand.MVAtomICOM --+
                                         |
                                        AddBondsGUICommand


    The AddBondGUICommand provides an interactive way of creating bonds between two given atoms by picking on them. To use this command you need first to load it into PMV. Then you can find the entry 'addBonds' under the Edit menu. To add bonds  you just need to pick on the 2 atoms you want to bind. If you drag select  a bunch of atoms, the command will buildBondsByDistance between them.This command is undoable.
   
Package : Pmv
   
Module  : bondsCommands
   
Class   : AddBondsGUICommand
   
Command : addBondsGC
   
Synopsis:

        None<-addBondsGC(atoms)

    
Required Arguments:
    
        atoms  : atom(s)

Instance Methods

[hide private]

__init__(self, func=None)

onRemoveObjectFromViewer(self, obj)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

__call__(self, atoms, **kw)
None<-addBondsGC(atoms)

doit(self, ats)
virtual method.

applyTransformation(self, pt, mat)

getTransformedCoords(self, atom)

update(self, event=None)

guiCallback(self, event=None)

setupUndoAfter(self, ats, **kw)
A chance to modify self.undoCmds after the command was carried out

startICOM(self)
gets called every time this command is about to be run becuase of a picking event.

stopICOM(self)
gets called when this command stops being bound to picking here one should withdraw forms mainly

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg