Package Pmv :: Module colorCommands :: Class ColorByAtomType
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Class ColorByAtomType

source code

ViewerFramework.VFCommand.Command --+            
                  mvCommand.MVCommand --+        
                             ColorCommand --+    
   ViewerFramework.VFCommand.ICOM --+       |    
                                    |       |    
                     mvCommand.MVICOM --+   |    
                                        |   |    
                     mvCommand.MVAtomICOM --+    
                             ColorFromPalette --+

The colorByAtomType command allows the user to color the given geometry representing the given nodes using the atomtype coloring scheme where:N :Blue ; C : White ; O : Red ; S : Yellow ; H : Cyan; P: Magenta;UNK:green.
Package : Pmv
Module  : colorCommands
Class   :  ColorByAtomType
Command : colorbyAtomType

    This coloring scheme gives some information on the atomic composition of
    the given nodes.


    None <- colorByAtomType(nodes, geomsToColor='all', **kw)

    nodes       : any set of MolKit nodes describing molecular components

    geomsToColor: list of the name of geometries to color default is 'all'

    Keywords: color, atom type


Instance Methods [hide private]
  __init__(self, func=None)

Inherited from ColorFromPalette: __call__, doit, getColors, guiCallback, onAddCmdToViewer, setupUndoBefore

Inherited from ColorCommand: addNewEntries, buildFormDescr, cleanup, color_cb, deselectall_cb, dismiss_cb, getAvailableGeoms, getChildrenGeomsName, getNodes, selectall_cb, showForm, showUndisplayed_cb

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildLogArgList, checkDependencies, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, tkCb, updateGeom, warningMsg

Inherited from mvCommand.MVAtomICOM: getObjects

Inherited from ViewerFramework.VFCommand.ICOM: initICOM, startICOM, stopICOM

Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly

Method Details [hide private]

__init__(self, func=None)

source code 
Overrides: ColorFromPalette.__init__