Package Pmv :: Module colorCommands :: Class ColorShapely
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Class ColorShapely

source code

ViewerFramework.VFCommand.Command --+            
                  mvCommand.MVCommand --+        
                             ColorCommand --+    
   ViewerFramework.VFCommand.ICOM --+       |    
                                    |       |    
                     mvCommand.MVICOM --+   |    
                                        |   |    
                     mvCommand.MVAtomICOM --+    
                             ColorFromPalette --+

The colorByShapely command allows the user to color the given geometries representing the given nodes using the Shapely coloring scheme where each residue has a different color. (For more information please refer to the pmv tutorial).
Package : Pmv
Module  : colorCommands
Class   : ColorByResidueType
Command : colorByResidueType

      None <- colorByShapely(nodes, geomsToColor='all', **kw)

      nodes --- any set of MolKit nodes describing molecular components

      geomsToColor --- list of the name of geometries to color default is 'all'

      Keywords --- color, shapely, residue type


Instance Methods [hide private]
  __init__(self, func=None)
  getColors(self, nodes)

Inherited from ColorFromPalette: __call__, doit, guiCallback, onAddCmdToViewer, setupUndoBefore

Inherited from ColorCommand: addNewEntries, buildFormDescr, cleanup, color_cb, deselectall_cb, dismiss_cb, getAvailableGeoms, getChildrenGeomsName, getNodes, selectall_cb, showForm, showUndisplayed_cb

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildLogArgList, checkDependencies, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, tkCb, updateGeom, warningMsg

Inherited from mvCommand.MVAtomICOM: getObjects

Inherited from ViewerFramework.VFCommand.ICOM: initICOM, startICOM, stopICOM

Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly

Method Details [hide private]

__init__(self, func=None)

source code 
Overrides: ColorFromPalette.__init__

getColors(self, nodes)

source code 
Overrides: ColorFromPalette.getColors