The DisplayInteractionsCommand class is used to display interactions
between a 'ligand' and a 'receptor' molecule: the ligand is displayed
with a msms surface...
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onAddCmdToViewer(self)
method called when an instance of this command is added to the
viewer.
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update_managed_sets(self,
event=None)
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getSSResidues(self,
mol)
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setupUndoBefore(self,
lig,
macro)
This method builds the self.undoCmds string.
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updateCpk(self,
lig,
macro)
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restoreCpk(self,
lig,
macro,
**kw)
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guiCallback(self)
called each time the 'Visualize Complex in Context' button is
pressed
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Accept_cb(self,
event=None)
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buildForm(self)
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__call__(self,
lig,
macro,
**kw)
None<-displayInteractions(self, lig, macro)
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cleanUpCrossSet(self)
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Close_cb(self,
event=None)
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revert(self,
event=None,
**kw)
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close(self,
event=None,
**kw)
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save(self,
filename=None,
event=None)
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updatePercentCutoff(self,
lig,
macro,
event=None)
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buildDisplayForm(self,
lig,
macro,
event=None)
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updateSphereDisplay(self,
lig,
macro,
event=None)
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printInfo(self,
event=None)
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print_macro_residue_contacts(self,
event=None)
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print_ligand_residue_contacts(self,
event=None)
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print_hydrogen_bonds(self,
event=None)
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updateMsms(self,
lig,
macro)
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updateHBonds(self,
lig,
macro)
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updateCCCpk(self,
lig,
macro,
event=None)
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showHideSecondaryStructure(self,
lig,
macro)
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updateSecondaryStructure(self,
lig,
macro)
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updateMM(self,
lig,
macro,
event=None)
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reset(self,
lig,
macro)
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buildLigandDisplay(self,
lig,
macro)
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buildCloseAtoms(self,
lig,
macro)
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buildHbondDisplay(self,
lig,
macro)
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build(self,
lig,
macro,
percentCutoff=1.)
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updatePiCation(self,
event=None)
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updatePiPi(self,
event=None)
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updateResLabels(self,
event=None)
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doit(self,
lig,
macro,
**kw)
virtual method.
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Inherited from mvCommand.MVCommand :
__init__ ,
strArg
Inherited from ViewerFramework.VFCommand.Command :
__repr__ ,
addCallbackAfter ,
addCallbackBefore ,
addUndoCall ,
afterDoit ,
beforeDoit ,
buildFormDescr ,
buildLogArgList ,
checkDependencies ,
cleanup ,
customizeGUI ,
doitWrapper ,
getArguments ,
getHelp ,
getLastUsedValues ,
getLogArgs ,
getValNamedArgs ,
log ,
logString ,
onAddNewCmd ,
onCmdRun ,
setLastUsedValues ,
setupUndoAfter ,
showForm ,
tkCb ,
updateGeom ,
warningMsg
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