Package Pmv :: Module displayCommands :: Class DisplayInteractionsCommand

Class DisplayInteractionsCommand

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       DisplayInteractionsCommand

The DisplayInteractionsCommand class is used to display interactions between a 'ligand' and a 'receptor' molecule: the ligand is displayed with a msms surface...

Package : Pmv

Module : displayCommands

Class : DisplayInteractionsCommand

Instance Methods

[hide private]

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

update_managed_sets(self, event=None)

getSSResidues(self, mol)

setupUndoBefore(self, lig, macro)
This method builds the self.undoCmds string.

updateCpk(self, lig, macro)

restoreCpk(self, lig, macro, **kw)

guiCallback(self)
called each time the 'Visualize Complex in Context' button is pressed

Accept_cb(self, event=None)

buildForm(self)

__call__(self, lig, macro, **kw)
None<-displayInteractions(self, lig, macro)

cleanUpCrossSet(self)

Close_cb(self, event=None)

revert(self, event=None, **kw)

close(self, event=None, **kw)

save(self, filename=None, event=None)

updatePercentCutoff(self, lig, macro, event=None)

buildDisplayForm(self, lig, macro, event=None)

updateSphereDisplay(self, lig, macro, event=None)

printInfo(self, event=None)

print_macro_residue_contacts(self, event=None)

print_ligand_residue_contacts(self, event=None)

print_hydrogen_bonds(self, event=None)

updateMsms(self, lig, macro)

updateHBonds(self, lig, macro)

updateCCCpk(self, lig, macro, event=None)

showHideSecondaryStructure(self, lig, macro)

updateSecondaryStructure(self, lig, macro)

updateMM(self, lig, macro, event=None)

reset(self, lig, macro)

buildLigandDisplay(self, lig, macro)

buildCloseAtoms(self, lig, macro)

buildHbondDisplay(self, lig, macro)

build(self, lig, macro, percentCutoff=1.)

updatePiCation(self, event=None)

updatePiPi(self, event=None)

updateResLabels(self, event=None)

doit(self, lig, macro, **kw)
virtual method.

Inherited from mvCommand.MVCommand: __init__, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, showForm, tkCb, updateGeom, warningMsg

Class Variables