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ViewerFramework.VFCommand.Command --+ | mvCommand.MVCommand --+ | PDBWriter
Command to write the given molecule or the given subset of atoms of one molecule as PDB file. Package : Pmv Module : fileCommands Class : PDBWriter Command : writePDB Synopsis: None <- writePDB( nodes, filename=None, sort=True, pdbRec=['ATOM', 'HETATM', 'CONECT'], bondOrigin='all', ssOrigin=None, **kw) Required Arguments: nodes --- TreeNodeSet holding the current selection Optional Arguments: filename --- name of the PDB file (default=None). If None is given The name of the molecule plus the .pdb extension will be used sort --- Boolean flag to either sort or not the nodes before writing the PDB file (default=True) pdbRec --- List of the PDB Record to save in the PDB file. (default: ['ATOM', 'HETATM', 'CONECT'] bondOrigin --- string or list specifying the origin of the bonds to save as CONECT records in the PDB file. Can be 'all' or a tuple ssOrigin --- Flag to specify the origin of the secondary structure information to be saved in the HELIX, SHEET and TURN record. Can either be None, File or Stride.
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| __init__(self, func=None) | ||
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doit(self,
nodes,
filename=None,
sort=True,
transformed=False,
pdbRec=['ATOM','HETATM','CONECT'],
bondOrigin='all',
ssOrigin=None) virtual method. |
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setNewCoords(self,
mol) set the current conformation to be 1 |
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__call__(self,
nodes,
filename=None,
sort=True,
transformed=False,
pdbRec=['ATOM','HETATM','CONECT'],
bondOrigin='all',
ssOrigin=None,
**kw) None <- writePDB( nodes, filename=None, sort=True, pdbRec=['ATOM', 'HETATM', 'CONECT'], bondOrigin='all', ssOrigin=None, **kw) Required Argument: nodes --- TreeNodeSet holding the current selection Optional Arguments: filename --- name of the PDB file (default=None). |
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| dismiss_cb(self) | ||
| showPDBHelp(self) | ||
| add_cb(self) | ||
| remove_cb(self) | ||
| setEntry_cb(self, filename) | ||
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buildFormDescr(self,
formName) descr <- buildFormDescr(self, formName): this virtual method is implemented in the classes derived from Command. |
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| guiCallback(self) | ||
Inherited from Inherited from Inherited from |
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Inherited from |
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None <- writePDB( nodes, filename=None, sort=True, pdbRec=['ATOM', 'HETATM', 'CONECT'], bondOrigin='all', ssOrigin=None, **kw) Required Argument: nodes --- TreeNodeSet holding the current selection Optional Arguments: filename --- name of the PDB file (default=None). If None is given The name of the molecule plus the .pdb extension will be used sort --- Boolean flag to either sort or not the nodes before writing the PDB file (default=True) pdbRec --- List of the PDB Record to save in the PDB file. (default: ['ATOM', 'HETATM', 'CONECT'] bondOrigin --- string or list specifying the origin of the bonds to save as CONECT records in the PDB file. Can be 'all' or a tuple ssOrigin --- Flag to specify the origin of the secondary structure information to be saved in the HELIX, SHEET and TURN record. Can either be None, File or Stride.
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