Package Pmv :: Module genparserCommands
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Module genparserCommands

source code

Classes [hide private]
  GenPDBReader
Command to load PDB files using parser with user defined specifications
  DefinePdbSpecifications
class to define some pdb specifications in a dictionary and save them in a file

Functions [hide private]
  initModule(viewer)

Variables [hide private]
  genPDBReaderGuiDescr = {'index': 0, 'menuBarName': 'File', 'menuButtonName'...
  GenPDBReaderGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  FieldNames = ('serial', 'name', 'altLoc', 'resName', 'chainID', '...
  variableTypes = ('int', 'character', 'float', 'alphabetic', 'string')
  specEntries = ('field_name', 'var_type', 'from', 'to', 'index')
  definePdbSpecificationsGuiDescr = {'index': 0, 'menuBarName': 'File', 'menuButtonName'...
  DefinePdbSpecificationsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  commandList = [{'gui': <ViewerFramework.VFCommand.CommandGUI insta...

Function Details [hide private]

initModule(viewer)

source code 
None

Variables Details [hide private]

genPDBReaderGuiDescr

None
Value:
{'index': 0,
 'menuBarName': 'File',
 'menuButtonName': 'Read PDB with Gen Parser ...',
 'widgetType': 'menuRoot'}                                             
      

GenPDBReaderGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb7627e6c>          
      

FieldNames

None
Value:
('serial', 'name', 'altLoc', 'resName', 'chainID', 'resSeq', 'iCode', 
'x', 'y')                                                              
      

variableTypes

None
Value:
('int', 'character', 'float', 'alphabetic', 'string')                  
      

specEntries

None
Value:
('field_name', 'var_type', 'from', 'to', 'index')                      
      

definePdbSpecificationsGuiDescr

None
Value:
{'index': 0,
 'menuBarName': 'File',
 'menuButtonName': 'Define Pdb Specifications...',
 'widgetType': 'menuRoot'}                                             
      

DefinePdbSpecificationsGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb758fc4c>          
      

commandList

None
Value:
[{'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb7627e6c>
,
  'name': 'genreadPDB'},
 {'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb758fc4c>
,
  'name': 'defPdbSpecs'}]