Package Pmv :: Module genparserCommands

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Module genparserCommands

source code

Classes

[hide private]

GenPDBReader
Command to load PDB files using parser with user defined specifications

DefinePdbSpecifications
class to define some pdb specifications in a dictionary and save them in a file

Functions

[hide private]

initModule(viewer)

Variables

[hide private]

genPDBReaderGuiDescr = {'index': 0, 'menuBarName': 'File', 'menuButtonName'...

GenPDBReaderGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

FieldNames = ('serial', 'name', 'altLoc', 'resName', 'chainID', '...

variableTypes = ('int', 'character', 'float', 'alphabetic', 'string')

specEntries = ('field_name', 'var_type', 'from', 'to', 'index')

definePdbSpecificationsGuiDescr = {'index': 0, 'menuBarName': 'File', 'menuButtonName'...

DefinePdbSpecificationsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

commandList = [{'gui': <ViewerFramework.VFCommand.CommandGUI insta...

Function Details

[hide private]

initModule(viewer)

source code

None

Variables Details

[hide private]

genPDBReaderGuiDescr

None

Value:

{'index': 0,
 'menuBarName': 'File',
 'menuButtonName': 'Read PDB with Gen Parser ...',
 'widgetType': 'menuRoot'}

GenPDBReaderGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb7627e6c>

FieldNames

None

Value:

('serial', 'name', 'altLoc', 'resName', 'chainID', 'resSeq', 'iCode', 
'x', 'y')

variableTypes

None

Value:

('int', 'character', 'float', 'alphabetic', 'string')

specEntries

None

Value:

('field_name', 'var_type', 'from', 'to', 'index')

definePdbSpecificationsGuiDescr

None

Value:

{'index': 0,
 'menuBarName': 'File',
 'menuButtonName': 'Define Pdb Specifications...',
 'widgetType': 'menuRoot'}

DefinePdbSpecificationsGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb758fc4c>

commandList

None

Value:

[{'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb7627e6c>
,
  'name': 'genreadPDB'},
 {'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb758fc4c>
,
  'name': 'defPdbSpecs'}]