Package Pmv :: Module genparserCommands :: Class GenPDBReader

Class GenPDBReader

ViewerFramework.VFCommand.Command --+            
                                    |            
                  mvCommand.MVCommand --+        
                                        |        
              fileCommands.MoleculeLoader --+    
                                            |    
                       fileCommands.PDBReader --+
                                                |
                                               GenPDBReader

Command to load PDB files using parser with user defined specifications

Instance Methods

[hide private]

__init__(self)

_doit(self, filename, specs)
does the parsing of the pdb file using specs object

doit(self, filename, specfile)
takes a pdb file name and a specification file name

__call__(self, filename, specfile, **kw)
mol <- genreadPDB(filename, specfile, **kw) filename: path name of the PDB file specfile: a specification file name

guiCallback(self, event=None, *args, **kw)

extractSpecs(self, file)
takes a specification file in proper format and creates a specs object

Inherited from fileCommands.PDBReader: onAddCmdToViewer, onRemoveObjectFromViewer

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg