Package Pmv :: Module hbondCommands :: Class AddHBondHydrogens

Class AddHBondHydrogens

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       AddHBondHydrogens

This command adds hydrogen atoms to preexisting hydrogen bonds
    
Package : Pmv
   
Module  : hbondCommands
   
Class   : AddHBondHydrogens
   
Command : addHBondHs
   
Synopsis:

    newHs <- addHBondHs(nodes, **kw):
   
Required Arguments:
        
            nodes --- atoms 

            newHs are new atoms, added to hbond.donAt

Instance Methods

[hide private]

__init__(self, func=None)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

dist(self, c1, c2)

chooseH(self, at, accAt)

doit(self, ats, renumber=1)
virtual method.

__call__(self, nodes, **kw)
newHs <--- addHBondHs(nodes, **kw)

Inherited from mvCommand.MVCommand: guiCallback, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg