Package Pmv :: Module hbondCommands :: Class DisplayHBondsAsCylinders
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Class DisplayHBondsAsCylinders

source code

ViewerFramework.VFCommand.Command --+        
                                    |        
                  mvCommand.MVCommand --+    
                                        |    
                            DisplayHBonds --+
                                            |
                                           DisplayHBondsAsCylinders

This class allows user to visualize pre-existing HydrogenBonds between 
atoms in viewer as cylinders
   
Package : Pmv
   
Module  : hbondCommands
   
Class   : DisplayHBondsAsCylinders
   
Command : displayHBCylinders
   
Synopsis:

        None <- displayHBCylinders(nodes, **kw)
    



Instance Methods [hide private]
  initGeom(self)
  __call__(self, nodes, **kw)
None <- displayHBCylinders(nodes, **kw)
  getIfd(self, atNames)
  setUpWidgets(self, atNames)
  update(self, event=None)
  adjustVerts(self, v1, v2, length)
  showAllHBonds(self, event=None)

Inherited from DisplayHBonds: __init__, changeColor, changeDVerts, closeChangeDVertLC, color_cb, dismiss_cb, doit, guiCallback, hidePalette_cb, interpolate, onAddCmdToViewer, reset, setAVerts, setDVerts, setupDisplay, showHBondLC, updateQuality

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

initGeom(self)

source code 
None
Overrides: DisplayHBonds.initGeom

__call__(self, nodes, **kw)
(Call operator)

source code 
None <- displayHBCylinders(nodes, **kw)
Overrides: ViewerFramework.VFCommand.Command.__call__

getIfd(self, atNames)

source code 
None
Overrides: DisplayHBonds.getIfd

setUpWidgets(self, atNames)

source code 
None
Overrides: DisplayHBonds.setUpWidgets

update(self, event=None)

source code 
None
Overrides: DisplayHBonds.update

adjustVerts(self, v1, v2, length)

source code 
None

showAllHBonds(self, event=None)

source code 
None
Overrides: DisplayHBonds.showAllHBonds