Package Pmv :: Module hbondCommands :: Class GetHydrogenBondAcceptors

Class GetHydrogenBondAcceptors

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       GetHydrogenBondAcceptors

This class allows user to get AtomSets of sp2 hydridized and sp3 hybridized
hydrogenBond Acceptors.
   
Package : Pmv
   
Module  : hbondCommands
   
Class   : GetHydrogenBondEnergies
   
Command : getHBondEnergies
   
Synopsis:

        sp2Acceptors, sp3Acceptors <- getHBAcceptors(nodes, acceptorList, **kw)

Instance Methods

[hide private]

__init__(self, func=None)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

__call__(self, nodes, acceptorList=allAcceptors, **kw)
sp2Acceptors, sp3Acceptors <- getHBAcceptors(nodes, acceptorList, **kw)

filterAcceptors(self, accAts)

doit(self, ats, acceptorList)
virtual method.

Inherited from mvCommand.MVCommand: guiCallback, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg