Package Pmv :: Module hbondCommands :: Class WriteAssemblyHBonds

Class WriteAssemblyHBonds

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       WriteAssemblyHBonds

Command to write a file specifying >1 chain with hydrogen bonds. Chains which are hydrogen-bonded are written in one pdb file.  They may or may not be part of the same molecule.
    
Package : Pmv
   
Module  : hbondCommands
   
Class   : WriteAssemblyHBonds
   
Command : writeAssemblyHB
   
Synopsis:

        None <--- writeAssemblyHB(filename, nodes, **kw)
   
Required Arguments:
     
        filename --- name of the hbond file

        nodes --- TreeNodeSet holding the current selection

Instance Methods

[hide private]

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

__call__(self, filename, nodes, **kw)
None <--- writeAssemblyHB(filename, nodes, **kw)

fixIDS(self, chains)

writeHYDBNDRecords(self, atoms, fptr)

doit(self, filename, nodes)
virtual method.

guiCallback(self)
Default callback function called by the gui

Inherited from mvCommand.MVCommand: __init__, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg