Module pmvPalettes

source code

Variables

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RasmolAmino = {'CYS': (0.89800000000000002, 0.89800000000000002, 0...

RasmolAminoSortedKeys = ['ALA', 'GLY', 'PRO', 'LEU', 'ILE', 'VAL', 'MET', 'C...

AtomElements = {'A': (0.0, 1.0, 0.0), 'C': (0.69999999999999996, 0....

DavidGoodsell = {'ASNHD2': (0.69999999999999996, 0.69999999999999996...

DavidGoodsellSortedKeys = ['C', 'HN', 'HH', 'H', 'O', 'SERHG', 'TYROH', 'TYRHH...

SecondaryStructureSides = {'down': (0.0, 1.0, 0.0), 'right': (0.0, 0.0, 1.0), ...

SecondaryStructureType = {'Turn': (0.375, 0.5, 1.0), 'Helix': (0.937000000000...

Shapely = {'CYS': (0.996, 0.996, 0.0), 'ASP': (0.996, 0.117000...

Rainbow = {'11': (0.5, 0.0, 1.0), '10': (1.0, 0.0, 0.5), '13':...

RainbowSortedKey = ['0', '1', '2', '3', '4', '5', '6', '7', '8', '9', '...

Variables Details

[hide private]

RasmolAmino

None

Value:

{'ALA': (0.78100000000000003, 0.78100000000000003, 0.78100000000000003
),
 'ARG': (0.078, 0.35199999999999998, 0.999),
 'ASN': (0.0, 0.89800000000000002, 0.89800000000000002),
 'ASP': (0.89800000000000002, 0.039, 0.039),
 'CYS': (0.89800000000000002, 0.89800000000000002, 0.0),
 'GLN': (0.0, 0.89800000000000002, 0.89800000000000002),
 'GLU': (0.89800000000000002, 0.039, 0.039),
...

RasmolAminoSortedKeys

None

Value:

['ALA', 'GLY', 'PRO', 'LEU', 'ILE', 'VAL', 'MET', 'CYS', 'THR']

AtomElements

None

Value:

{'A': (0.0, 1.0, 0.0),
 'C': (0.69999999999999996, 0.69999999999999996, 0.69999999999999996),
 'CA': (1.0, 0.0, 1.0),
 'H': (0.0, 1.0, 1.0),
 'N': (0.0, 0.0, 1.0),
 'O': (1.0, 0.0, 0.0),
 'P': (1.0, 0.0, 1.0),
 'S': (1.0, 1.0, 0.0)}

DavidGoodsell

None

Value:

{'ARGHE': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGHH11': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGHH12': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGHH21': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGHH22': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGNE': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGNH1': (0.20000000000000001, 0.29999999999999999, 1.0),
 'ARGNH2': (0.20000000000000001, 0.29999999999999999, 1.0),
...

DavidGoodsellSortedKeys

None

Value:

['C', 'HN', 'HH', 'H', 'O', 'SERHG', 'TYROH', 'TYRHH', 'THRHG1']

SecondaryStructureSides

None

Value:

{'down': (0.0, 1.0, 0.0),
 'left': (0.0, 0.0, 1.0),
 'right': (0.0, 0.0, 1.0),
 'up': (1.0, 0.0, 0.0)}

SecondaryStructureType

None

Value:

{'Coil': (1.0, 1.0, 1.0),
 'Helix': (0.93700000000000006, 0.0, 0.5),
 'Strand': (1.0, 1.0, 0.0),
 'Turn': (0.375, 0.5, 1.0)}

Shapely

None

Value:

{'ALA': (0.11700000000000001, 0.70299999999999996, 0.11700000000000001
),
 'ARG': (0.222, 0.222, 0.40600000000000003),
 'ASN': (0.73399999999999999, 0.55800000000000005, 0.55800000000000005
),
 'ASP': (0.996, 0.11700000000000001, 0.11700000000000001),
 'CYS': (0.996, 0.996, 0.0),
 'GLN': (0.996, 0.55800000000000005, 0.55800000000000005),
...

Rainbow

None

Value:

{'0': (0.0, 0.0, 1.0),
 '1': (0.0, 1.0, 0.0),
 '10': (1.0, 0.0, 0.5),
 '11': (0.5, 0.0, 1.0),
 '12': (0.5, 0.0, 0.20000000000000001),
 '13': (0.0, 0.5, 0.20000000000000001),
 '14': (0.75, 0, 1),
 '15': (1.0, 0.75, 0),
...

RainbowSortedKey

None

Value:

['0', '1', '2', '3', '4', '5', '6', '7', '8']