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ViewerFramework.VFCommand.Command --+ | mvCommand.MVCommand --+ | CheckForMissingAtoms
This command compares atoms present in residues with those expected by the dictionary used to assign Kollman charges, qkollua. It returns a dictionary of whose keys are residues missing atoms and whose values are the names of the missing atoms. The keys are strings built from the residue name + its chain id. Package : Pmv Module : repairCommands Class : CheckForMissingAtomsCommand Command : checkForMissingAtoms Synopsis: dictOfMissingAts <--- checkForMissingAtoms(nodes, **kw) Required Arguments: nodes --- TreeNodeSet holding the current selection
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| onRemoveObjFromViewer(self, obj) | ||
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onAddCmdToViewer(self) method called when an instance of this command is added to the viewer. |
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doit(self,
resSet) virtual method. |
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__call__(self,
nodes,
**kw) dictOfMissingAts <--- checkForMissingAtoms(nodes, **kw) |
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Inherited from Inherited from Inherited from |
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Inherited from |
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dictOfMissingAts <--- checkForMissingAtoms(nodes, **kw) nodes --- TreeNodeSet holding the current selection
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