Package Pmv :: Module repairCommands :: Class EditHistHydrogens

Class EditHistHydrogens

ViewerFramework.VFCommand.Command --+    
                                    |    
                  mvCommand.MVCommand --+
                                        |
                                       EditHistHydrogens

Allows user to edit hydrogens in histidine residues
     
Package : Pmv
   
Module  : repairCommands
   
Class   : EditHistHydrogens
   
Command : editHist_h
   
Synopsis:

            newHydrogens <--- editHist_h(nodeDict, **kw)
   
Required Arguments:
        
            nodeDict --- a dictionary of a TreeNodeSet holding the current selection

Instance Methods

[hide private]

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

__call__(self, nodeDict, **kw)
newHydrogens <--- editHist_h(nodeDict, **kw)

doit(self, nodeDict)
virtual method.

editHIS(self, res, key)

fixCharges(self, h, a, kollCh, gastCh)

HD1(self, res, hasHD1, hasHE2)

HE2(self, res, hasHD1, hasHE2)

HD1HE2(self, res, hasHD1, hasHE2)

addNewH(self, a, name)

Inherited from mvCommand.MVCommand: __init__, guiCallback, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg