Package Pmv :: Module sdCommands
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Module sdCommands

source code

Classes [hide private]
  MolIndexedPolygons
Package : Pmv Module : sdCommands Class : MolIndexedPolygons Command : None
  ReadMolIndexedPolygons
Package : Pmv Module : sdCommands Class : ReadMolIndexedPolygons Command : readMolIndexedPolygons Description: Class to read two files (defining vertices and faces) to generate a MolIndexedPolygons instance and assign it to a molecule.
  ColorMolIndexedPolygons
Package : Pmv Module : sdCommands Class : ColorMolIndexedPolygons Command : colorMolIndexedPolygons Description: The ColorMolIndexedPolygons class provides a mechanism for coloring a MolIndexedPolygons instance according to its surface properties (i.e.
  ReadDockdata
Package : Pmv Module : sdCommands Class : ReadDockdata Command : readDockdata Description: The ReadDockdata class is a subclass of ReadMolIndexedPolygons for reading dockdata files as used by surfdock.
  ReadHarmony
Package : Pmv Module : sdCommands Class : ReadHarmony Command : readHarmony Description: The ReadHarmony class is a subclass of ReadMolIndexedPolygons for reading files generated by the Harmony suite (usually having the suffix 'field'.
  ReadBlur
Package : Pmv Module : sdCommands Class : ReadBlur Command : readBlur Description: The ReadHarmony class is a subclass of ReadMolIndexedPolygons for reading files generated by the Gaussian Blur method.
  ReadMSMS
molName, vertfile,trifile,propertyList,name,normals
  DisplayMolIndexedPolygons
Package : Pmv Module : sdCommands Class : DisplayMolIndexedPolygons Command : displayMolIndexedPolygons Description: The DisplayMolIndexedPolygons is used to display MolIndexedPolygons instances (or parts thereof) which are associated with the selected nodes Synopsis: None <- displayMolIndexPolygons(nodes,name,only,negate,**kw) nodes : nodes for which polygons will be displayed name : name of the polygon to be displayed only : display polygon for these atoms _only_ (i.e.
  UndisplayMolIndexedPolygons
  ApplyTransformations
Opens up the Transformation Control GUI which allows reading in and scanning through transformations.
  ReadTransformations
This command is invoked everytime the Qlist Filename entryfield is invoked.
  SelectVertex
This command allows a user to pick a vertex.

Functions [hide private]
  initModule(viewer)

Variables [hide private]
  Transform = <class mglutil.math.transformation.Transformation at...
  ReadTransformationsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  ApplyTransformationsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  ReadDockdataGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  ReadHarmonyGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  ReadBlurGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  DisplayMolIndexedPolygonsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  ColorMolIndexedPolygonsGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  SelectVertexGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...
  commandList = [{'gui': <ViewerFramework.VFCommand.CommandGUI insta...

Function Details [hide private]

initModule(viewer)

source code 
None

Variables Details [hide private]

Transform

None
Value:
<class mglutil.math.transformation.Transformation at 0xb795283c>       
      

ReadTransformationsGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbdac>          
      

ApplyTransformationsGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbc8c>          
      

ReadDockdataGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbd4c>          
      

ReadHarmonyGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbd8c>          
      

ReadBlurGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbd6c>          
      

DisplayMolIndexedPolygonsGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2ab604c>          
      

ColorMolIndexedPolygonsGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2ab602c>          
      

SelectVertexGUI

None
Value:
<ViewerFramework.VFCommand.CommandGUI instance at 0xb2ab608c>          
      

commandList

None
Value:
[{'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbdac>
,
  'name': 'readTransformations'},
 {'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb2cdbc8c>
,
  'name': 'applyTransformations'},
...