Package Pmv :: Module sdCommands :: Class ReadBlur
[hide private]
[frames] | no frames]

Class ReadBlur

source code

ViewerFramework.VFCommand.Command --+        
                                    |        
                  mvCommand.MVCommand --+    
                                        |    
                   ReadMolIndexedPolygons --+
                                            |
                                           ReadBlur


Package : Pmv
Module  : sdCommands
Class   : ReadBlur
Command : readBlur

Description:
The ReadHarmony class is a subclass of ReadMolIndexedPolygons for
reading files generated by the Gaussian Blur method. The triangulation
file is taken from the vertices file (i.e. given MOL.dockdata, it looks
for MOL.face). Properties are the same as for old harmony dockdata files,
qith kmax and kmin added at the end

Synopsis:
  None <- readBlur(molName,vertfile,atom_index,name,**kw)
  molName        : name of the molecule to which the polygon belongs
  vertfile       : name of the blur-generated dockdatafile
  atom_index     : (optional) file containing assignment of vertices to atoms
  name           : (optional) name to assign to the geometry.

Keywords: blur,surfdock,geometry



Instance Methods [hide private]
  __call__(self, molName, vertfile, atom_index=None, name=None, **kw)
None <- readMolIndexedPolygons(nodes, vertfile, trifile, atom_file, propertyList, name,**kw) nodes : TreeNodeSet holding a molecule vertfile: vertices and normals trifile : one-based triangulation file atom_file: (optional) output of cluster assigning atoms to vertices propertyList: list of names of surface properties in the vertfile
  guiCallback(self)

Inherited from ReadMolIndexedPolygons: __init__, atomPropToVertices, doit, onAddObjectToViewer, pickedVerticesToAtoms, pickedVerticesToBonds

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddCmdToViewer, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

__call__(self, molName, vertfile, atom_index=None, name=None, **kw)
(Call operator)

source code 
None <- readMolIndexedPolygons(nodes, vertfile, trifile, atom_file, propertyList, name,**kw) nodes : TreeNodeSet holding a molecule vertfile: vertices and normals trifile : one-based triangulation file atom_file: (optional) output of cluster assigning atoms to vertices propertyList: list of names of surface properties in the vertfile
Overrides: ReadMolIndexedPolygons.__call__
(inherited documentation)

guiCallback(self)

source code 
Overrides: ReadMolIndexedPolygons.guiCallback