Package Pmv :: Module selectionCommands

Module selectionCommands

Classes

MVSelectCommand
Class for modfying the current selection in a molecule Viewer.

MVAddSelectCommand
This Command adds to the current selection Package : Pmv Module : selectionCommands Class : MVAddSelectCommand Command : addselect Synopsis: currentSelection <--- addselect(nodes, klass=None, **kw) Required Arguments: nodes --- TreeNodeSet holding the current selection klass --- if specified nodes are converted to a set of that type otherwise and selection level is set to Klass.

MVXorSelectCommand
This Command xors the current selection Package : Pmv Module : selectionCommands Class : MVXorSelectCommand Command : xorselect Synopsis: currentSelection <--- xorselect(nodes, klass=None, **kw) Required Arguments: nodes --- TreeNodeSet holding the current selection klass --- if specified nodes are converted to a set of that type otherwise and selection level is set to Klass.

MVDeSelectCommand
This Command deselects the current selection Package : Pmv Module : selectionCommands Class : MVDeSelectCommand Command : deselect Synopsis: currentSelection <--- deselect(nodes, klass=None, **kw) Required Arguments: nodes --- TreeNodeSet holding the current selection klass --- if specified nodes are converted to a set of that type otherwise and selection level is set to Klass.

MVClearSelection
MVClearSelect implements method to clear the current selection.

MVSaveSetCommand
Save a selection under a user specified name...

MVCreateSetIfNeeded
create a set, but only if it does not already exist...

MVSelectSetCommand
This Command is used to select the saved set.

MVSelectFromStringCommand
molStr,chainStr,residueStr,atomStr Select items by typed-in strings: one for each level.

MVDirectSelectCommand
This Command allows you to directly select from moleculelist,chainlist,setslist...

MVSelectSphericalRegion
This Command selects nodes from a specified base within specified spherical region(s) Package : Pmv Module : selectionCommands Class : MVSelectSphericalRegion Command : selectInSphere Synopsis: None <- selectInSphere(centerList, radius, selList, **kw) Required Arguments: centerList --- specifies the centers of the selection spheres radius --- radius of the selection spheres selList --- specifies selection base (atoms to test) possible selList values are ['all'], a list of sets or a list of molecule names.

MVInvertSelection
Inverts current selection.

Functions

[hide private]

initModule(viewer)

Variables

[hide private]

MVClearSelectionGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

sets__ = {}

mvSaveSetCommandGuiDescr = {'menuBarName': 'menuRoot', 'menuButtonName': 'Selec...

MVSaveSetCommandGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

mvSelectSetCommandGuiDescr = {'menuBarName': 'menuRoot', 'menuButtonName': 'Selec...

MVSelectSetCommandGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

mvSelectFromStringCommandGuiDescr = {'separatorBelow': 1, 'menuBarName': 'menuRoot', 'me...

MVSelectFromStringCommandGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

mvDirectSelectCommandGuiDescr = {'separatorBelow': 1, 'menuBarName': 'menuRoot', 'me...

MVDirectSelectCommandGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

mvSelectSphericalRegionGuiDescr = {'menuBarName': 'menuRoot', 'menuButtonName': 'Selec...

MVSelectSphericalRegionGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

mvInvertSelectionGuiDescr = {'separatorBelow': 1, 'menuBarName': 'menuRoot', 'me...

MVInvertSelectionGUI = <ViewerFramework.VFCommand.CommandGUI instance at 0x...

commandList = [{'gui': None, 'cmd': self., 'name': 'select'}, {'gu...

Function Details

[hide private]

initModule(viewer)

source code

None

Variables Details

[hide private]

MVClearSelectionGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f5856c>

sets__

None

Value:

{}

mvSaveSetCommandGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'Save current selection as a set',
 'widgetType': 'Menu'}

MVSaveSetCommandGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f585cc>

mvSelectSetCommandGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'Select a set',
 'widgetType': 'Menu'}

MVSelectSetCommandGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f5866c>

mvSelectFromStringCommandGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'Select From String',
 'separatorBelow': 1,
 'widgetType': 'Menu'}

MVSelectFromStringCommandGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f5886c>

mvDirectSelectCommandGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'Direct Select',
 'separatorBelow': 1,
 'widgetType': 'Menu'}

MVDirectSelectCommandGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f5896c>

mvSelectSphericalRegionGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'SphericalRegion',
 'widgetType': 'Menu'}

MVSelectSphericalRegionGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f58a8c>

mvInvertSelectionGuiDescr

None

Value:

{'menuBarName': 'menuRoot',
 'menuButtonName': 'Select',
 'menuEntryLabel': 'invert selection',
 'separatorBelow': 1,
 'widgetType': 'Menu'}

MVInvertSelectionGUI

None

Value:

<ViewerFramework.VFCommand.CommandGUI instance at 0xb6f58acc>

commandList

None

Value:

[{'gui': None, 'cmd': self., 'name': 'select'},
 {'gui': None, 'cmd': self., 'name': 'deselect'},
 {'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb6f5856c>
,
  'name': 'clearSelection'},
 {'cmd': self.,
  'gui': <ViewerFramework.VFCommand.CommandGUI instance at 0xb6f585cc>
...