Package Pmv :: Module superImposeCommands :: Class PmvAlignmentEditor
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[frames] | no frames]

Class PmvAlignmentEditor

source code

           Tkinter.Misc --+                
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         Tkinter.BaseWidget --+            
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               Tkinter.Pack --+            
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              Tkinter.Place --+            
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               Tkinter.Grid --+            
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                 Tkinter.Widget --+        
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                      Tkinter.Frame --+    
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mglutil.alignmentEditor.AlignmentEditor --+
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  ViewerFramework.VFCommand.Command --+   |
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                    mvCommand.MVCommand --+
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                                         PmvAlignmentEditor

An alignment editor that knows about Pmv

Nested Classes [hide private]

Inherited from Tkinter.Misc: getdouble, getint


Instance Methods [hide private]
  __init__(self, alignment=None, vf=None, name=None, **kw)
  addPmvMenu(self)
  setRefSequence(self)
  setMobSequence(self)
  getPairsFromAlignment(self)
This is where we want to figure out the selection
  getSequence(self, mol=None)
  select(self, items, deselect=0)

Inherited from mglutil.alignmentEditor.AlignmentEditor: clearSelBox, clearSelection, closeGap, continueSelection, createGUI, createMenus, deleteSelectedResidues, deleteSelectedSequences, deleteSequence, exit, fillCanvas, findAllToRight, findNeighborSequences, findToLeft, loadFile, makeEditMenu, makeFileMenu, mouseDeselect, mouseDown, mouseMotion, mouseSelect, mouseUp, openGap, rebuildSelectionTags, redraw, remakeAlignment, startSelection, swapSequences, trim, updateColor, updateSpecialColor, writeFile

Inherited from Tkinter.BaseWidget: destroy

Inherited from Tkinter.BaseWidget (private): _do, _setup

Inherited from Tkinter.Misc: __getitem__, __setitem__, __str__, after, after_cancel, after_idle, bbox, bell, bind, bind_all, bind_class, bindtags, cget, clipboard_append, clipboard_clear, colormodel, columnconfigure, config, configure, deletecommand, event_add, event_delete, event_generate, event_info, focus, focus_displayof, focus_force, focus_get, focus_lastfor, focus_set, getboolean, getvar, grab_current, grab_release, grab_set, grab_set_global, grab_status, grid_bbox, grid_columnconfigure, grid_location, grid_propagate, grid_rowconfigure, grid_size, grid_slaves, image_names, image_types, keys, lift, lower, mainloop, nametowidget, option_add, option_clear, option_get, option_readfile, pack_propagate, pack_slaves, place_slaves, propagate, quit, register, rowconfigure, selection_clear, selection_get, selection_handle, selection_own, selection_own_get, send, setvar, size, slaves, tk_bisque, tk_focusFollowsMouse, tk_focusNext, tk_focusPrev, tk_menuBar, tk_setPalette, tk_strictMotif, tkraise, unbind, unbind_all, unbind_class, update, update_idletasks, wait_variable, wait_visibility, wait_window, waitvar, winfo_atom, winfo_atomname, winfo_cells, winfo_children, winfo_class, winfo_colormapfull, winfo_containing, winfo_depth, winfo_exists, winfo_fpixels, winfo_geometry, winfo_height, winfo_id, winfo_interps, winfo_ismapped, winfo_manager, winfo_name, winfo_parent, winfo_pathname, winfo_pixels, winfo_pointerx, winfo_pointerxy, winfo_pointery, winfo_reqheight, winfo_reqwidth, winfo_rgb, winfo_rootx, winfo_rooty, winfo_screen, winfo_screencells, winfo_screendepth, winfo_screenheight, winfo_screenmmheight, winfo_screenmmwidth, winfo_screenvisual, winfo_screenwidth, winfo_server, winfo_toplevel, winfo_viewable, winfo_visual, winfo_visualid, winfo_visualsavailable, winfo_vrootheight, winfo_vrootwidth, winfo_vrootx, winfo_vrooty, winfo_width, winfo_x, winfo_y

Inherited from Tkinter.Misc (private): _bind, _configure, _displayof, _getboolean, _getdoubles, _getints, _grid_configure, _nametowidget, _options, _register, _report_exception, _root, _substitute

Inherited from Tkinter.Pack: forget, info, pack, pack_configure, pack_forget, pack_info

Inherited from Tkinter.Place: place, place_configure, place_forget, place_info

Inherited from Tkinter.Grid: grid, grid_configure, grid_forget, grid_info, grid_remove, location

Inherited from mvCommand.MVCommand: guiCallback, strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __call__, __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildFormDescr, buildLogArgList, checkDependencies, cleanup, customizeGUI, doit, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddCmdToViewer, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg


Class Variables [hide private]

Inherited from Tkinter.Misc: _noarg_

Inherited from Tkinter.Misc (private): _subst_format, _subst_format_str, _tclCommands

Inherited from ViewerFramework.VFCommand.Command: negateKw, objArgOnly


Method Details [hide private]

__init__(self, alignment=None, vf=None, name=None, **kw)
(Constructor)

source code 
None
Overrides: mglutil.alignmentEditor.AlignmentEditor.__init__

addPmvMenu(self)

source code 
None

setRefSequence(self)

source code 
None

setMobSequence(self)

source code 
None

getPairsFromAlignment(self)

source code 
This is where we want to figure out the selection

getSequence(self, mol=None)

source code 
None

select(self, items, deselect=0)

source code 
None
Overrides: mglutil.alignmentEditor.AlignmentEditor.select