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doit(self,
refAtoms,
inAtoms,
inAllAtoms=None)
The SuperimposeCoordsCommand takes two set of Atoms of the same
length refAtoms and inAtoms, a subset of inAllAtoms, plus an optional
third set, inAllAtoms, It computes the rotation and translation
matrices to superimpose the inAtoms onto the refAtoms using rigidFit
module.
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__call__(self,
refAtoms,
inAtoms,
inAllAtoms=None,
**kw)
None <- superimposeCoords(refAtoms, inAtoms, inAllAtoms, **kw)
refAtoms: atoms in reference structure
inAtoms: corresponding atoms in structure to be moved
by rigidFit to refAtoms
inAllAtoms: complete set of all atoms whose coords are to be
transformed bytranslation and rotation matrices from rigidFit.
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Inherited from mvCommand.MVCommand :
__init__ ,
guiCallback ,
strArg
Inherited from ViewerFramework.VFCommand.Command :
__repr__ ,
addCallbackAfter ,
addCallbackBefore ,
addUndoCall ,
afterDoit ,
beforeDoit ,
buildFormDescr ,
buildLogArgList ,
checkDependencies ,
cleanup ,
customizeGUI ,
doitWrapper ,
getArguments ,
getHelp ,
getLastUsedValues ,
getLogArgs ,
getValNamedArgs ,
log ,
logString ,
onAddNewCmd ,
onCmdRun ,
setLastUsedValues ,
setupUndoAfter ,
setupUndoBefore ,
showForm ,
tkCb ,
updateGeom ,
warningMsg
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