Package Pmv :: Module superimposeCommandsNew :: Class SuperimposeAtomsGUICommand

Class SuperimposeAtomsGUICommand

ViewerFramework.VFCommand.Command --+        
                                    |        
                  mvCommand.MVCommand --+    
                                        |    
                       SuperimposeCommand --+
                                            |
   ViewerFramework.VFCommand.ICOM --+       |
                                    |       |
                     mvCommand.MVICOM --+   |
                                        |   |
                     mvCommand.MVAtomICOM --+
                                            |
                                           SuperimposeAtomsGUICommand



The SuperimposeAtomsGUICommand provides a GUI interface to the
SuperimposeAtomsCommand. This commands allows the user to create two sets
of atoms one reference and mobile of the same length by picking,
by string or using the alignment editor.
These two sets are then fed to the SuperimposeAtoms command.

- For now Only two 2 sets of Atoms belonging to a ref molecule and
  a mobile molecule can be superimposed simultaneously.

- The command provides two way of defining those two sets of atoms:
  * By picking nodes 
  * By string:
  * Using the alignment editor

Instance Methods

[hide private]

__init__(self, func=None)

onAddCmdToViewer(self)
method called when an instance of this command is added to the viewer.

onRemoveObjectFromViewer(self, obj)

initICOM(self, modifier)
gets called when the ICOM is registered using the set method of the interactiveCommandCaller.

labelByName(self, pick)

unlabelLevel(self, newLevel, oldLevel)

stopICOM(self)
gets called when this command stops being bound to picking here one should withdraw forms mainly

createNodesSets(self, refnodes=None, mobnodes=None)

createPairs(self, refnames, mobnames, slice, choice)

pick_cb(self)

string_cb(self)

setDefault(self, text)

delete_cb(self)

dismiss_cb(self)

continuous_cb(self)

reset_cb(self)

superimpose_cb(self)

add_cb(self)

refremove_cb(self)

mobremove_cb(self)

refmoveup_cb(self)

mobmoveup_cb(self)

refmovedown_cb(self)

mobmovedown_cb(self)

guiCallback(self)
Default callback function called by the gui

buildFormDescr(self, formName)
descr <- buildFormDescr(self, formName): this virtual method is implemented in the classes derived from Command.

Inherited from SuperimposeCommand: __call__, doit

Inherited from mvCommand.MVCommand: strArg

Inherited from mvCommand.MVCommand (private): _strArg

Inherited from ViewerFramework.VFCommand.Command: __repr__, addCallbackAfter, addCallbackBefore, addUndoCall, afterDoit, beforeDoit, buildLogArgList, checkDependencies, cleanup, customizeGUI, doitWrapper, getArguments, getHelp, getLastUsedValues, getLogArgs, getValNamedArgs, log, logString, onAddNewCmd, onCmdRun, setLastUsedValues, setupUndoAfter, setupUndoBefore, showForm, tkCb, updateGeom, warningMsg

Inherited from mvCommand.MVAtomICOM: getObjects

Inherited from ViewerFramework.VFCommand.ICOM: startICOM

Class Variables