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A
a_allAcceptors
(in
Pmv.hbondCommands
)
addMVBasicMenus()
(in
MoleculeViewer
)
APBSSetupGUI
(in
Pmv.APBSCommands
)
About
(in
Pmv.aboutCommands
)
addNewEntries()
(in
ColorCommand
)
APBSStatusPortType_address
(in
APBSServiceLocator
)
aboutCommands
(in
Pmv
)
addNewH()
(in
EditHistHydrogens
)
APBSStatusPortTypeSoapBindingSOAP
(in
Pmv.APBSService_services
)
AboutGUI
(in
Pmv.aboutCommands
)
addNodeTree()
(in
TreeViewWithCheckbuttons
)
APBSVolumeRender
(in
Pmv.APBSCommands
)
absolute
(in
Pmv.Grid
)
AddOXT
(in
Pmv.repairCommands
)
APBSVolumeRender_GUI
(in
Pmv.APBSCommands
)
Accept_cb()
(in
ConstrainAtomsAmber94
)
AddOXTGUICommand
(in
Pmv.repairCommands
)
APBSWrite_APBS_Parameter_File
(in
Pmv.APBSCommands
)
Accept_cb()
(in
FreezeAtomsAmber94
)
AddOXTGUICommandGUI
(in
Pmv.repairCommands
)
APBSWrite_Parameter_File_GUI
(in
Pmv.APBSCommands
)
Accept_cb()
(in
MinimizeAmber94
)
addPmvMenu()
(in
PmvAlignmentEditor
)
apply()
(in
AddRemove
)
Accept_cb()
(in
MolecularDynamicsAmber94
)
AddRemove
(in
Pmv.grid3DCommands
)
apply_cb()
(in
EditHistHydrogensGUICommand
)
Accept_cb()
(in
PlayMolecularDynamicsTrjAmber94
)
AddRemoveGUI
(in
Pmv.grid3DCommands
)
applyState()
(in
TrajPlayer
)
Accept_cb()
(in
SetMDOptsAmber94
)
addSlice()
(in
AutoGridSliceGui
)
applyState()
(in
TrajPlayerCached
)
Accept_cb()
(in
SetMinimOptsAmber94
)
addToList()
(in
ApplyTransformations
)
applyTransformation()
(in
AddBondsGUICommand
)
Accept_cb()
(in
DisplayInteractionsCommand
)
addTorsion()
(in
TorsionHistory
)
applyTransformation()
(in
Pmv.hbondCommands
)
Accept_cb()
(in
AddHBondHydrogensGUICommand
)
addToSpecs_cb()
(in
DefinePdbSpecifications
)
ApplyTransformations
(in
Pmv.sdCommands
)
Accept_cb()
(in
BuildHydrogenBondsGUICommand
)
addVolume()
(in
MoleculeViewer
)
ApplyTransformationsGUI
(in
Pmv.sdCommands
)
Accept_cb()
(in
ShowHBDonorsAcceptors
)
adjustVerts()
(in
DisplayHBondsAsCylinders
)
arccos
(in
Pmv.Grid
)
Accept_cb()
(in
SetTorsionGUICommand
)
afterAddingToNetwork()
(in
PmvNode
)
arccosh
(in
Pmv.Grid
)
Accept_cb2()
(in
ConstrainAtomsAmber94
)
alignment_cb()
(in
SuperImposeAtomsGUICommand
)
arcsin
(in
Pmv.Grid
)
add
(in
Pmv.Grid
)
allAcceptors
(in
Pmv.hbondCommands
)
arcsinh
(in
Pmv.Grid
)
add()
(in
AddRemove
)
allatoms
(in
Pmv.Ribbon
)
arctan
(in
Pmv.Grid
)
add()
(in
MoleculeListChooser
)
allChoices()
(in
NewMsmsPicker
)
arctan2
(in
Pmv.Grid
)
add()
(in
MVSelectFromStringCommand
)
allDonors
(in
Pmv.hbondCommands
)
arctanh
(in
Pmv.Grid
)
Add_ADT()
(in
MoleculeViewer
)
alpha_arr
(in
LUT_data
)
askMapType()
(in
readAnyGrid
)
add_cb()
(in
PDBWriter
)
alpha_cb()
(in
VolRenCommand
)
AssignAtomsRadiiCommand
(in
Pmv.editCommands
)
add_cb()
(in
SuperimposeAtomsGUICommand
)
Alt_cb()
(in
MVIcomGUI
)
AssignAtomsRadiiCommandGUI
(in
Pmv.editCommands
)
Add_Nucleic_Bases()
(in
Pmv.NucleicBases
)
Amber94Config
(in
Pmv.amberCommands
)
assignAtomsRadiiGUICommandGuiDescr
(in
Pmv.editCommands
)
add_profile()
(in
APBSSetup
)
amberCommands
(in
Pmv
)
AssignBuriedAreas
(in
Pmv.msmsCommands
)
Add_Remove()
(in
Grid3DCommands
)
angle()
(in
MeasureAngle
)
AssignBuriedAreasGUI
(in
Pmv.msmsCommands
)
addAngle()
(in
TorsionAngle
)
APBS_proxy
(in
Pmv.APBSCommands
)
assignBuriedSurfaceGuiDescr
(in
Pmv.msmsCommands
)
addArrow()
(in
ExtrudeObject
)
APBS_ssl
(in
Pmv.APBSCommands
)
astype()
(in
Grid
)
addAxisSlice()
(in
GetOrthoSlice
)
APBSBlockingPortType_address
(in
APBSServiceLocator
)
AtomElements
(in
Pmv.pmvPalettes
)
addBar()
(in
IGraph
)
APBSBlockingPortTypeSoapBindingSOAP
(in
Pmv.APBSService_services
)
AtomPicker
(in
Pmv.picker
)
AddBondsCommand
(in
Pmv.bondsCommands
)
APBSCmdToWebService
(in
Pmv.APBSCommands
)
atomPropToVertices()
(in
BindGeomToMolecularFragment
)
AddBondsGUICommand
(in
Pmv.bondsCommands
)
APBSCommands
(in
Pmv
)
atomPropToVertices()
(in
DisplayLines
)
AddBondsGUICommandGUI
(in
Pmv.bondsCommands
)
APBSDisplay_Isocontours
(in
Pmv.APBSCommands
)
atomPropToVertices()
(in
DisplayPath3DCommand
)
addCallback()
(in
ColorMapGUI
)
APBSDisplay_Isocontours_GUI
(in
Pmv.APBSCommands
)
atomPropToVertices()
(in
LabelByProperties
)
addCallback()
(in
ShowMolecules
)
APBSDisplayOrthoSlice
(in
Pmv.APBSCommands
)
atomPropToVertices()
(in
ComputeMSMS
)
addColumnDescriptor()
(in
MolFragTreeWithButtons
)
APBSDisplayOrthoSlice_GUI
(in
Pmv.APBSCommands
)
atomPropToVertices()
(in
ReadMolIndexedPolygons
)
addColumnDescriptor()
(in
Dashboard
)
apbsFaultOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
atomPropToVertices()
(in
ExtrudeSecondaryStructureCommand
)
AddDashboardCmd
(in
Pmv.dashboardCommands
)
APBSIsoContour_net
(in
Pmv.VisionInterface
)
atomPropToVertices()
(in
DisplaySplineAsLineCommand
)
addFirstLastPoints()
(in
Sheet2D
)
APBSJobSubPortType_address
(in
APBSServiceLocator
)
atomPropToVertices()
(in
ExtrudeSplineCommand
)
addGeom()
(in
MolGeomContainer
)
APBSJobSubPortTypeSoapBindingSOAP
(in
Pmv.APBSService_services
)
atomPropToVertices()
(in
ComputeTraceCommand
)
addGeom()
(in
StringSelectorGUI
)
APBSLoad_Profile
(in
Pmv.APBSCommands
)
AtomType_Def
(in
nbcr_sdsc_edu_molecule_types
)
AddHBondCommand
(in
Pmv.hbondCommands
)
APBSLoad_Profile_GUI
(in
Pmv.APBSCommands
)
attachmore_cb()
(in
BugReportCommand
)
AddHBondCommandGUICommand
(in
Pmv.hbondCommands
)
APBSMap_Potential_to_MSMS
(in
Pmv.APBSCommands
)
AugmentedMoleculeChooser
(in
Pmv.guiTools
)
AddHBondCommandGUICommandGUI
(in
Pmv.hbondCommands
)
APBSMap_Potential_to_MSMS_GUI
(in
Pmv.APBSCommands
)
autocenterCoarseGrid()
(in
APBSSetup
)
AddHBondGuiDescr
(in
Pmv.hbondCommands
)
apbsOutput()
(in
APBSSetup
)
autocenterFineGrid()
(in
APBSSetup
)
AddHBondHydrogens
(in
Pmv.hbondCommands
)
APBSOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
AutoGrid
(in
Pmv.Grid
)
AddHBondHydrogensGUICommand
(in
Pmv.hbondCommands
)
APBSPot2MSMS_net
(in
Pmv.VisionInterface
)
AutoGridIsoSurface
(in
Pmv.gridCommands
)
AddHBondHydrogensGUICommandGUI
(in
Pmv.hbondCommands
)
APBSPreferences
(in
Pmv.APBSCommands
)
AutoGridIsoSurfaceGUI
(in
Pmv.gridCommands
)
AddHBondHydrogensGUICommandGuiDescr
(in
Pmv.hbondCommands
)
APBSPreferences_GUI
(in
Pmv.APBSCommands
)
autoGridIsoSurfaceguiDescr
(in
Pmv.gridCommands
)
AddHydrogensCommand
(in
Pmv.editCommands
)
APBSRun
(in
Pmv.APBSCommands
)
AutoGridReader
(in
Pmv.gridCommands
)
AddHydrogensGUICommand
(in
Pmv.editCommands
)
APBSRun_GUI
(in
Pmv.APBSCommands
)
AutoGridReaderGUI
(in
Pmv.gridCommands
)
AddHydrogensGUICommandGUI
(in
Pmv.editCommands
)
apbsRunRemote()
(in
APBSSetup
)
autoGridReaderGuiDescr
(in
Pmv.gridCommands
)
addHydrogensGUICommandGuiDescr
(in
Pmv.editCommands
)
APBSSave_Profile
(in
Pmv.APBSCommands
)
AutoGridSliceGui
(in
Pmv.Grid
)
addIon()
(in
APBSSetup
)
APBSSave_Profile_GUI
(in
Pmv.APBSCommands
)
AutoGridSurfaceGui
(in
Pmv.Grid
)
AddKollmanChargesCommand
(in
Pmv.editCommands
)
APBSService_services
(in
Pmv
)
autosizeCoarseGrid()
(in
APBSSetup
)
AddKollmanChargesGUICommand
(in
Pmv.editCommands
)
APBSService_services_types
(in
Pmv
)
autosizeFineGrid()
(in
APBSSetup
)
AddKollmanChargesGUICommandGUI
(in
Pmv.editCommands
)
APBSServiceInterface
(in
Pmv.APBSService_services
)
averageCharge()
(in
AverageChargeErrorCommand
)
addKollmanChargesGUICommandGuiDescr
(in
Pmv.editCommands
)
APBSServiceLocator
(in
Pmv.APBSService_services
)
averageCharge()
(in
CheckChargesGUICommand
)
addMolecule()
(in
MoleculeViewer
)
APBSservicesFound
(in
Pmv.APBSCommands
)
AverageChargeErrorCommand
(in
Pmv.editCommands
)
addMolecules()
(in
ControlPanel
)
APBSSetup
(in
Pmv.APBSCommands
)
B
b
(in
Pmv.NucleicBases
)
buildChainMenus()
(in
MVSelectFromStringCommand
)
buildFormDescr()
(in
SaveMSMS
)
ballsAndLicorice_cb()
(in
DisplaySticksAndBalls
)
buildCloseAtoms()
(in
DisplayInteractionsCommand
)
buildFormDescr()
(in
SetupPdb2Pqr
)
BarButton
(in
Pmv.guiTools
)
buildCmdDict()
(in
StringSelectorGUI
)
buildFormDescr()
(in
ComputeSecondaryStructureCommand
)
baseURI
(in
readFromWebCommand
)
buildConf()
(in
TrajPlayer
)
buildFormDescr()
(in
ExtrudeSecondaryStructureCommand
)
bbmode_cb()
(in
CPCommandEditor
)
buildCoords()
(in
ModifyNTerminus
)
buildFormDescr()
(in
MVSaveSetCommand
)
bbmodeOptMenu()
(in
MVColumnDescriptor
)
buildDisplayForm()
(in
DisplayInteractionsCommand
)
buildFormDescr()
(in
ComputeSplineGUICommand
)
beforeAddingToNetwork()
(in
GetMSMSGeom
)
buildEnergies()
(in
LimitHydrogenBonds
)
buildFormDescr()
(in
CustomSplineCommand
)
beforeAddingToNetwork()
(in
PmvGetSelection
)
buildEnergies()
(in
ShowHydrogenBonds
)
buildFormDescr()
(in
ExtrudeSplineCommand
)
beforeAddingToNetwork()
(in
PmvMolecule
)
buildFaces()
(in
ExtrudeObject
)
buildFormDescr()
(in
SuperImposeAtomsGUICommand
)
beforeAddingToNetwork()
(in
PmvMoleculeChooser
)
buildForm()
(in
APBSDisplay_Isocontours
)
buildFormDescr()
(in
SuperimposeAtomsGUICommand
)
beforeAddingToNetwork()
(in
PmvNode
)
buildForm()
(in
ConstrainAtomsAmber94
)
buildFormDescr()
(in
ComputeTraceCommand
)
beforeAddingToNetwork()
(in
PmvSetInstanceMatrices
)
buildForm()
(in
FreezeAtomsAmber94
)
buildFormDescr()
(in
CustomTraceCommand
)
beforeAddingToNetwork()
(in
PmvSetNode
)
buildForm()
(in
MinimizeAmber94
)
buildFormDescr()
(in
DisplayTraceCommand
)
beforeAddingToNetwork()
(in
PmvViewer
)
buildForm()
(in
MolecularDynamicsAmber94
)
buildFormDescr()
(in
ExtrudeTraceCommand
)
beforeAddingToNetwork()
(in
PmvVolume
)
buildForm()
(in
PlayMolecularDynamicsTrjAmber94
)
buildFormDescr()
(in
PlayTrajectoryCommand
)
beforeRemovingFromNetwork()
(in
PmvViewer
)
buildForm()
(in
SetMDOptsAmber94
)
buildFormDescr()
(in
loadVUFile
)
BHTree_CUT
(in
Pmv.SLCommands
)
buildForm()
(in
SetMinimOptsAmber94
)
buildFormDescr()
(in
loadVect
)
BHTree_CUT
(in
Pmv.displayCommands
)
buildForm()
(in
DisplayInteractionsCommand
)
buildFormDescr()
(in
ExportSets
)
bind_cb()
(in
coarseMolSurface
)
buildForm()
(in
AutoGridIsoSurface
)
buildFrame()
(in
StringSelectorGUI
)
bindCallback()
(in
StringSelectorGUI
)
buildForm()
(in
BuildHydrogenBondsGUICommand
)
buildGUI()
(in
CPCommandEditor
)
bindFinish()
(in
Povray
)
buildForm()
(in
ShowHBDonorsAcceptors
)
buildGUI()
(in
StringSelectorGUI
)
BindGeomToMolecularFragment
(in
Pmv.displayCommands
)
buildForm()
(in
MVSetSelectionLevel
)
buildHbondDisplay()
(in
DisplayInteractionsCommand
)
BindGeomToMolecularFragmentBase
(in
Pmv.displayCommands
)
buildForm()
(in
CheckForCloseContactsGUICommand
)
BuildHydrogenBonds
(in
Pmv.hbondCommands
)
BindGeomToMolecularFragmentGUI
(in
Pmv.displayCommands
)
buildForm()
(in
MVDirectSelectCommand
)
BuildHydrogenBondsGUICommand
(in
Pmv.hbondCommands
)
BindingEnergyInputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
buildForm()
(in
MVSelectFromStringCommand
)
BuildHydrogenBondsGUICommandGUI
(in
Pmv.hbondCommands
)
bindMenuButton()
(in
StringSelectorGUI
)
buildForm()
(in
MVSelectSphericalRegion
)
BuildHydrogenBondsGUICommandGuiDescr
(in
Pmv.hbondCommands
)
bindPigment()
(in
Povray
)
buildForm()
(in
SetTorsionGUICommand
)
buildifdDict()
(in
StringSelectorGUI
)
bitwise_and
(in
Pmv.Grid
)
buildForm2()
(in
ConstrainAtomsAmber94
)
buildInputFormDescr()
(in
AtomPicker
)
bitwise_or
(in
Pmv.Grid
)
buildFormDescr()
(in
APBSSetup
)
buildInputFormDescr()
(in
BondPicker
)
bitwise_xor
(in
Pmv.Grid
)
buildFormDescr()
(in
SLCommand
)
buildInputFormDescr()
(in
MsmsPicker
)
blinker
(in
Pmv.APBSCommands
)
buildFormDescr()
(in
SaveBsptCommand
)
buildInputFormDescr()
(in
NewMsmsPicker
)
BlockingOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
buildFormDescr()
(in
coarseMolSurface
)
buildLigandDisplay()
(in
DisplayInteractionsCommand
)
blurCoordsRadii()
(in
Pmv.computeIsovalue
)
buildFormDescr()
(in
ColorByExpression
)
buildMenu()
(in
MVSelectFromStringCommand
)
BondPicker
(in
Pmv.picker
)
buildFormDescr()
(in
ColorByProperties
)
buildMenu()
(in
StringSelectorGUI
)
bondsCommands
(in
Pmv
)
buildFormDescr()
(in
ColorCommand
)
buildMolMenu()
(in
StringSelectorGUI
)
BoundaryConditionsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
buildFormDescr()
(in
BindGeomToMolecularFragment
)
buildMolMenus()
(in
MVDirectSelectCommand
)
Brep_To_Bspt()
(in
SLGeom
)
buildFormDescr()
(in
DisplayBackboneTrace
)
buildMolMenus()
(in
MVSelectFromStringCommand
)
bspline()
(in
Pmv.Ribbon
)
buildFormDescr()
(in
DisplayBoundGeom
)
buildObject()
(in
MoleculeListChooser
)
BugReportCommand
(in
Pmv.helpCommands
)
buildFormDescr()
(in
DisplayCPK
)
buildPlayModeMenu()
(in
TrajPlayer
)
BugReportCommandGUI
(in
Pmv.helpCommands
)
buildFormDescr()
(in
DisplayCPKByProperty
)
buildPortsForNamedArgs()
(in
PmvRunCommand
)
build()
(in
DisplayInteractionsCommand
)
buildFormDescr()
(in
DisplayCommand
)
buildQlistMenu()
(in
ApplyTransformations
)
build_all_hydrogens()
(in
SetupPdb2Pqr
)
buildFormDescr()
(in
DisplayLines
)
buildRamp()
(in
ColorMapGUI
)
build_atom()
(in
SetupPdb2Pqr
)
buildFormDescr()
(in
DisplaySticksAndBalls
)
buildResMenus()
(in
MVSelectFromStringCommand
)
Build_cb()
(in
TrajPlayer
)
buildFormDescr()
(in
ShowMolecules
)
buildResMenus()
(in
StringSelectorGUI
)
build_hydrogen()
(in
SetupPdb2Pqr
)
buildFormDescr()
(in
ComputeSheet2DCommand
)
buildSetsMenus()
(in
MVDirectSelectCommand
)
build_missing_atoms()
(in
SetupPdb2Pqr
)
buildFormDescr()
(in
DisplayPath3DCommand
)
buildSetsMenus()
(in
MVSelectFromStringCommand
)
buildAngles()
(in
ShowHydrogenBonds
)
buildFormDescr()
(in
Nucleic_Acids_properties
)
buildSliceVertices()
(in
Grid
)
buildArgs()
(in
ApplyTransformations
)
buildFormDescr()
(in
MoleculeReader
)
buildTextureCoords()
(in
Grid
)
buildArgs()
(in
MVSelectFromStringCommand
)
buildFormDescr()
(in
PDBWriter
)
buildTkVars()
(in
StringSelectorGUI
)
buildArgs()
(in
StringSelectorGUI
)
buildFormDescr()
(in
readFromWebCommand
)
buildTransformationMatrix()
(in
Sheet2D
)
buildAtomMenus()
(in
MVSelectFromStringCommand
)
buildFormDescr()
(in
BugReportCommand
)
buildWidgets()
(in
StringSelectorGUI
)
buildAtomMenus()
(in
StringSelectorGUI
)
buildFormDescr()
(in
mailingListsCommand
)
button3()
(in
IGraph
)
BuildBondsByDistance
(in
Pmv.bondsCommands
)
buildFormDescr()
(in
LabelByExpression
)
button3()
(in
myTF
)
buildBondsByDistanceDescr
(in
Pmv.bondsCommands
)
buildFormDescr()
(in
LabelByProperties
)
button3OnLabel()
(in
MolFragNodeWithButtons
)
BuildBondsByDistanceGUI
(in
Pmv.bondsCommands
)
buildFormDescr()
(in
AssignBuriedAreas
)
button_cb()
(in
ColorMapGUI
)
buildBrepSet()
(in
SLGeom
)
buildFormDescr()
(in
ComputeMSMS
)
buttonClick()
(in
NodeWithCheckbuttons
)
buildBrepSet0()
(in
SLGeom
)
buildFormDescr()
(in
DisplayBuriedTriangles
)
buttonKeywords
(in
StringSelectorGUI
)
buildBsptSet()
(in
SLGeom
)
buildFormDescr()
(in
DisplayMSMS
)
byteswapped()
(in
Grid
)
buildChainMenu()
(in
StringSelectorGUI
)
buildFormDescr()
(in
IdentifyBuriedVertices
)
buildChainMenus()
(in
MVDirectSelectCommand
)
buildFormDescr()
(in
ReadMSMS
)
C
caat
(in
Pmv.Ribbon
)
cleanUpCrossSet()
(in
AddHBondHydrogensGUICommand
)
commandList
(in
Pmv.dashboardCommands
)
calcSlice()
(in
AutoGridSliceGui
)
cleanUpCrossSet()
(in
BuildHydrogenBondsGUICommand
)
commandList
(in
Pmv.deleteCommands
)
calculateBindingEnergy()
(in
APBSJobSubPortTypeSoapBindingSOAP
)
cleanUpCrossSet()
(in
LimitHydrogenBonds
)
commandList
(in
Pmv.displayCommands
)
calculateBindingEnergyBlocking()
(in
APBSBlockingPortTypeSoapBindingSOAP
)
cleanupDicts()
(in
CheckForCloseContacts
)
commandList
(in
Pmv.editCommands
)
calculateBindingEnergyBlockingInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
cleanupDicts()
(in
CheckForCloseContactsGUICommand
)
commandList
(in
Pmv.extrusionCommands
)
calculateBindingEnergyBlockingOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
clear()
(in
ColorMapGUI
)
commandList
(in
Pmv.fileCommands
)
calculateBindingEnergyBlockingRequest
(in
Pmv.APBSService_services
)
clear()
(in
AtomPicker
)
commandList
(in
Pmv.genparserCommands
)
calculateBindingEnergyBlockingRequestWrapper
(in
Pmv.APBSService_services
)
clear()
(in
BondPicker
)
commandList
(in
Pmv.grid3DCommands
)
calculateBindingEnergyBlockingResponse
(in
Pmv.APBSService_services
)
clear()
(in
MVSelectCommand
)
commandList
(in
Pmv.gridCommands
)
calculateBindingEnergyBlockingResponseWrapper
(in
Pmv.APBSService_services
)
clear_cb()
(in
MVSelectSphericalRegion
)
commandList
(in
Pmv.hbondCommands
)
calculateBindingEnergyInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Clear_cb()
(in
StringSelectorGUI
)
commandList
(in
Pmv.helpCommands
)
calculateBindingEnergyOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
clearCache_cb()
(in
TrajPlayerCached
)
commandList
(in
Pmv.interactiveCommands
)
calculateBindingEnergyRequest
(in
Pmv.APBSService_services
)
clearForm()
(in
ApplyTransformations
)
commandList
(in
Pmv.labelCommands
)
calculateBindingEnergyRequestWrapper
(in
Pmv.APBSService_services
)
clearForm()
(in
MVSelectFromStringCommand
)
commandList
(in
Pmv.measureCommands
)
calculateBindingEnergyResponse
(in
Pmv.APBSService_services
)
clearPDBCache()
(in
readFromWebCommand
)
commandList
(in
Pmv.msmsCommands
)
calculateBindingEnergyResponseWrapper
(in
Pmv.APBSService_services
)
clearSel()
(in
MVSelectFromStringCommand
)
commandList
(in
Pmv.multiresCommands
)
calculateElectrostaticPotential()
(in
APBSJobSubPortTypeSoapBindingSOAP
)
clearSpecs_cb()
(in
DefinePdbSpecifications
)
commandList
(in
Pmv.pdb2pqrCommands
)
calculateElectrostaticPotentialBlocking()
(in
APBSBlockingPortTypeSoapBindingSOAP
)
close()
(in
DisplayInteractionsCommand
)
commandList
(in
Pmv.povrayCommands
)
calculateElectrostaticPotentialBlockingInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Close_cb()
(in
ConstrainAtomsAmber94
)
commandList
(in
Pmv.repairCommands
)
calculateElectrostaticPotentialBlockingOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Close_cb()
(in
FreezeAtomsAmber94
)
commandList
(in
Pmv.sdCommands
)
calculateElectrostaticPotentialBlockingRequest
(in
Pmv.APBSService_services
)
Close_cb()
(in
MinimizeAmber94
)
commandList
(in
Pmv.secondaryStructureCommands
)
calculateElectrostaticPotentialBlockingRequestWrapper
(in
Pmv.APBSService_services
)
Close_cb()
(in
MolecularDynamicsAmber94
)
commandList
(in
Pmv.selectionCommands
)
calculateElectrostaticPotentialBlockingResponse
(in
Pmv.APBSService_services
)
Close_cb()
(in
PlayMolecularDynamicsTrjAmber94
)
commandList
(in
Pmv.setangleCommands
)
calculateElectrostaticPotentialBlockingResponseWrapper
(in
Pmv.APBSService_services
)
Close_cb()
(in
SetMDOptsAmber94
)
commandList
(in
Pmv.splineCommands
)
calculateElectrostaticPotentialInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Close_cb()
(in
SetMinimOptsAmber94
)
commandList
(in
Pmv.superImposeCommands
)
calculateElectrostaticPotentialOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Close_cb()
(in
DisplayInteractionsCommand
)
commandList
(in
Pmv.superimposeCommandsNew
)
calculateElectrostaticPotentialRequest
(in
Pmv.APBSService_services
)
Close_cb()
(in
AutoGridIsoSurface
)
commandList
(in
Pmv.traceCommands
)
calculateElectrostaticPotentialRequestWrapper
(in
Pmv.APBSService_services
)
Close_cb()
(in
GetOrthoSlice
)
commandList
(in
Pmv.trajectoryCommands
)
calculateElectrostaticPotentialResponse
(in
Pmv.APBSService_services
)
Close_cb()
(in
AddHBondHydrogensGUICommand
)
commandList
(in
Pmv.updateCommands
)
calculateElectrostaticPotentialResponseWrapper
(in
Pmv.APBSService_services
)
Close_cb()
(in
BuildHydrogenBondsGUICommand
)
commandList
(in
Pmv.vectfieldCommands
)
calculateSolvationEnergy()
(in
APBSJobSubPortTypeSoapBindingSOAP
)
Close_cb()
(in
LimitHydrogenBonds
)
commandList
(in
Pmv.visionCommands
)
calculateSolvationEnergyBlocking()
(in
APBSBlockingPortTypeSoapBindingSOAP
)
Close_cb()
(in
ShowHBDonorsAcceptors
)
commandList
(in
Pmv.writeMsmsAsCommands
)
calculateSolvationEnergyBlockingInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
Close_cb()
(in
MVSetSelectionLevel
)
compareFrom()
(in
DefinePdbSpecifications
)
calculateSolvationEnergyBlockingOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
close_cb()
(in
MVSelectSphericalRegion
)
compareIndex()
(in
DefinePdbSpecifications
)
calculateSolvationEnergyBlockingRequest
(in
Pmv.APBSService_services
)
Close_cb()
(in
StringSelectorGUI
)
Complex0
(in
Pmv.Grid
)
calculateSolvationEnergyBlockingRequestWrapper
(in
Pmv.APBSService_services
)
closeChangeDVertLC()
(in
DisplayHBonds
)
Complex16
(in
Pmv.Grid
)
calculateSolvationEnergyBlockingResponse
(in
Pmv.APBSService_services
)
closeChangeDVertLC()
(in
ExtrudeHydrogenBonds
)
Complex32
(in
Pmv.Grid
)
calculateSolvationEnergyBlockingResponseWrapper
(in
Pmv.APBSService_services
)
closeRGB()
(in
myTF
)
Complex64
(in
Pmv.Grid
)
calculateSolvationEnergyInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
closestMatch()
(in
Pmv.APBSCommands
)
Complex8
(in
Pmv.Grid
)
calculateSolvationEnergyOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
cmdlib
(in
Pmv
)
complexSelect()
(in
APBSSetup
)
calculateSolvationEnergyRequest
(in
Pmv.APBSService_services
)
cmdlist
(in
Pmv.cmdlib
)
compute()
(in
coarseMolSurface
)
calculateSolvationEnergyRequestWrapper
(in
Pmv.APBSService_services
)
cmGUI_cb()
(in
ColorByExpression
)
compute()
(in
Sheet2D
)
calculateSolvationEnergyResponse
(in
Pmv.APBSService_services
)
cmGUI_cb()
(in
ColorByProperties
)
computeBinormals()
(in
Sheet2D
)
calculateSolvationEnergyResponseWrapper
(in
Pmv.APBSService_services
)
coarseMolSurface
(in
Pmv.coarseMolSurfaceCommands
)
computeBlurCurvature()
(in
Pmv.computeIsovalue
)
CalculationParamsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
CoarseMolSurface_net
(in
Pmv.VisionInterface
)
ComputeExtrudeSplineCommand
(in
Pmv.splineCommands
)
calculationParamUpdate()
(in
APBSSetup
)
coarseMolSurfaceCommands
(in
Pmv
)
ComputeExtrudeSplineGUI
(in
Pmv.splineCommands
)
call_method_13
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
coarseMolSurfaceGUI
(in
Pmv.coarseMolSurfaceCommands
)
computeExtrudeSplineGuiDescr
(in
Pmv.splineCommands
)
CallBack()
(in
AutoGridSliceGui
)
coarseResolutionX()
(in
APBSSetup
)
ComputeExtrudeTraceCommand
(in
Pmv.traceCommands
)
CallBack()
(in
AutoGridSurfaceGui
)
coarseResolutionY()
(in
APBSSetup
)
ComputeExtrudeTraceGUI
(in
Pmv.traceCommands
)
CallBack()
(in
GetOrthoSlice
)
coarseResolutionZ()
(in
APBSSetup
)
computeExtrudeTraceGuiDescr
(in
Pmv.traceCommands
)
callCallbacks()
(in
ColorMapGUI
)
code
(in
Pmv.VisionInterface.APBSIsoContour_net
)
computeFaces2D()
(in
Sheet2D
)
callDoit()
(in
MVSelectFromStringCommand
)
code
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
ComputeGasteigerCommand
(in
Pmv.editCommands
)
callDontDoit()
(in
MVSelectFromStringCommand
)
col_selectfield_cb()
(in
DefinePdbSpecifications
)
ComputeGasteigerGUICommand
(in
Pmv.editCommands
)
callIt()
(in
MVSelectFromStringCommand
)
colAtColDescr
(in
Pmv.dashboard
)
ComputeGasteigerGUICommandGUI
(in
Pmv.editCommands
)
Cancel()
(in
NewMsmsPicker
)
colChainColDescr
(in
Pmv.dashboard
)
computeGasteigerGUICommandGuiDescr
(in
Pmv.editCommands
)
cancel_cb()
(in
SaveBsptCommand
)
colDGColDescr
(in
Pmv.dashboard
)
computeIsocontour()
(in
Pmv.computeIsovalue
)
cancel_cb()
(in
DeleteAllMolecules
)
colHasButtton()
(in
TreeViewWithCheckbuttons
)
computeIsovalue
(in
Pmv
)
cancel_cb()
(in
DeleteAtomSet
)
colInstColDescr
(in
Pmv.dashboard
)
computeIsovalue()
(in
Pmv.computeIsovalue
)
cancel_cb()
(in
DeleteMolecule
)
colMolColDescr
(in
Pmv.dashboard
)
ComputeMSMS
(in
Pmv.msmsCommands
)
cancel_cb()
(in
MergeLonePairsGUICommand
)
color()
(in
GridPointSet
)
ComputeMSMSApprox
(in
Pmv.msmsCommands
)
cancel_cb()
(in
MergeNPHsGUICommand
)
color_arr
(in
LUT_data
)
ComputeMSMSApproxGUI
(in
Pmv.msmsCommands
)
cancel_cb()
(in
CenterChooser
)
color_cb()
(in
ColorCommand
)
ComputeMSMSGUI
(in
Pmv.msmsCommands
)
cancel_cb()
(in
ShowHBDonorsAcceptors
)
color_cb()
(in
VolRenCommand
)
computeMSMSvolume()
(in
Pmv.computeIsovalue
)
cancel_cb()
(in
CheckForCloseContactsGUICommand
)
color_cb()
(in
DisplayHBonds
)
computeNormals()
(in
Sheet2D
)
cancelManu()
(in
IGraph
)
color_cb()
(in
DisplayHBondsAsSpheres
)
computeResidueSpheres()
(in
ComputeMSMSApprox
)
cancelManu()
(in
myTF
)
color_cb()
(in
ExtrudeHydrogenBonds
)
ComputeSecondaryStructureCommand
(in
Pmv.secondaryStructureCommands
)
cao
(in
Pmv.Ribbon
)
Color_Map_12
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
ComputeSheet2DCommand
(in
Pmv.extrusionCommands
)
cascadeName
(in
Pmv.APBSCommands
)
colorBar()
(in
IGraph
)
ComputeSheet2DGUI
(in
Pmv.extrusionCommands
)
cb()
(in
Pmv.colorMap
)
ColorByAtomType
(in
Pmv.colorCommands
)
ComputeSplineCommand
(in
Pmv.splineCommands
)
ceil
(in
Pmv.Grid
)
ColorByAtomTypeGUI
(in
Pmv.colorCommands
)
computeSplineCommandGuiDescr
(in
Pmv.splineCommands
)
CenterChooser
(in
Pmv.guiTools
)
colorByAtomTypeGuiDescr
(in
Pmv.colorCommands
)
ComputeSplineGUICommand
(in
Pmv.splineCommands
)
chainCommands()
(in
TreeViewWithCheckbuttons
)
ColorByChain
(in
Pmv.colorCommands
)
ComputeSplineGUICommandGUI
(in
Pmv.splineCommands
)
change_Menu_state()
(in
Pmv.APBSCommands
)
ColorByChainGUI
(in
Pmv.colorCommands
)
computeSSGUI
(in
Pmv.secondaryStructureCommands
)
changeBox()
(in
AutoGridSurfaceGui
)
colorByChainGuiDescr
(in
Pmv.colorCommands
)
computeSSGuiDescr
(in
Pmv.secondaryStructureCommands
)
changeBox()
(in
AddRemove
)
ColorByDG
(in
Pmv.colorCommands
)
ComputeTraceCommand
(in
Pmv.traceCommands
)
changeChildrenVisible()
(in
AddRemove
)
ColorByDGGUI
(in
Pmv.colorCommands
)
ComputeTraceGUI
(in
Pmv.traceCommands
)
changeColor()
(in
DisplayHBonds
)
colorByDGGuiDescr
(in
Pmv.colorCommands
)
computeTraceGuiDescr
(in
Pmv.traceCommands
)
changeColor()
(in
ExtrudeHydrogenBonds
)
ColorByExpression
(in
Pmv.colorCommands
)
configureButton()
(in
LabelByProperties
)
changeDVerts()
(in
DisplayHBonds
)
ColorByExpressionGUI
(in
Pmv.colorCommands
)
conjugate
(in
Pmv.Grid
)
changeDVerts()
(in
ExtrudeHydrogenBonds
)
colorByExpressionGuiDescr
(in
Pmv.colorCommands
)
constantSaturation()
(in
ColorMapGUI
)
changeGrid()
(in
GetOrthoSlice
)
ColorByInstance
(in
Pmv.colorCommands
)
constantValue()
(in
ColorMapGUI
)
changeMenuState()
(in
APBSSetup
)
ColorByInstanceGUI
(in
Pmv.colorCommands
)
ConstrainAtomsAmber94
(in
Pmv.amberCommands
)
changeRenderMode()
(in
AutoGridSurfaceGui
)
colorByInstanceGuiDescr
(in
Pmv.colorCommands
)
ConstrainAtomsAmber94CommandGUI
(in
Pmv.amberCommands
)
changeSize()
(in
IGraph
)
ColorByMolecule
(in
Pmv.colorCommands
)
cont_cb()
(in
MergeLonePairsGUICommand
)
changeSliceVisibility()
(in
AutoGridSliceGui
)
ColorByMoleculeGUI
(in
Pmv.colorCommands
)
cont_cb()
(in
MergeNPHsGUICommand
)
changeVisibility()
(in
AutoGridSurfaceGui
)
colorByMoleculeGuiDescr
(in
Pmv.colorCommands
)
continue_cb()
(in
DeleteAllMolecules
)
ChargeDiscretizationType_Def
(in
nbcr_sdsc_edu_apbs_types
)
ColorByProperties
(in
Pmv.colorCommands
)
continue_cb()
(in
DeleteAtomSet
)
check_edit_geoms()
(in
Pmv.editCommands
)
ColorByPropertiesGUI
(in
Pmv.colorCommands
)
continue_cb()
(in
DeleteMolecule
)
check_hbond_geoms()
(in
Pmv.hbondCommands
)
colorByPropertiesGuiDescr
(in
Pmv.colorCommands
)
continuous_cb()
(in
SuperImposeAtomsGUICommand
)
check_measure_geoms()
(in
Pmv.measureCommands
)
colorByResdueTypeGuiDescr
(in
Pmv.colorCommands
)
continuous_cb()
(in
SuperimposeAtomsGUICommand
)
check_repair_geoms()
(in
Pmv.repairCommands
)
ColorByResidueType
(in
Pmv.colorCommands
)
continuousUpdate_cb()
(in
MeasureGUICommand
)
checkButton_cb()
(in
ShowMolecules
)
ColorByResidueTypeGUI
(in
Pmv.colorCommands
)
ControlPanel
(in
Pmv.controlPanelCommands
)
CheckChargesGUICommand
(in
Pmv.editCommands
)
colorBySecondaryStructureTypeGuiDescr
(in
Pmv.secondaryStructureCommands
)
ControlPanel_GUI
(in
Pmv.controlPanelCommands
)
CheckChargesGUICommandGUI
(in
Pmv.editCommands
)
ColorBySSElementType
(in
Pmv.secondaryStructureCommands
)
controlPanelCommands
(in
Pmv
)
checkChargesGUICommandGuiDescr
(in
Pmv.editCommands
)
ColorBySSElementTypeGUI
(in
Pmv.secondaryStructureCommands
)
convert_to_Brep()
(in
SLGeom
)
checkDependencies()
(in
RestoreBsptCommand
)
colorByValue()
(in
GridPointSet
)
coordinate2index()
(in
AutoGrid
)
checkDependencies()
(in
SLCommand
)
ColorCommand
(in
Pmv.colorCommands
)
CoordinateType_Def
(in
nbcr_sdsc_edu_molecule_types
)
checkDependencies()
(in
SaveBsptCommand
)
colorCommands
(in
Pmv
)
coords
(in
Pmv.Ribbon
)
checkDependencies()
(in
BindGeomToMolecularFragment
)
ColorFromPalette
(in
Pmv.colorCommands
)
copy()
(in
ColorPalette
)
checkDependencies()
(in
DisplayBoundGeom
)
ColorFromRamp
(in
Pmv.colorCommands
)
copyFix()
(in
APBSRun
)
checkDependencies()
(in
AssignBuriedAreas
)
ColorGUI
(in
Pmv.colorCommands
)
cos
(in
Pmv.Grid
)
checkDependencies()
(in
ComputeMSMS
)
colorGUI()
(in
myTF
)
cosh
(in
Pmv.Grid
)
checkDependencies()
(in
DisplayBuriedTriangles
)
colorGuiDescr
(in
Pmv.colorCommands
)
CPCommandEditor
(in
Pmv.controlPanelCommands
)
checkDependencies()
(in
DisplayIntermolecularBuriedTriangles
)
colorMap
(in
Pmv
)
createColumnWidgets()
(in
DefinePdbSpecifications
)
checkDependencies()
(in
IdentifyBuriedVertices
)
ColorMap_cb()
(in
myTF
)
createGeometries()
(in
DisplayPath3DCommand
)
checkDependencies()
(in
MsmsNPR
)
colorMapEditor_cb()
(in
ColorMolIndexedPolygons
)
createGeometries()
(in
ExtrudeSecondaryStructureCommand
)
checkDependencies()
(in
SetupPdb2Pqr
)
ColorMapGUI
(in
Pmv.colorMap
)
createGeometries()
(in
DisplaySplineAsLineCommand
)
CheckForCloseContacts
(in
Pmv.repairCommands
)
ColorMolIndexedPolygons
(in
Pmv.sdCommands
)
createGeometries()
(in
ExtrudeSplineCommand
)
CheckForCloseContactsGUICommand
(in
Pmv.repairCommands
)
ColorMolIndexedPolygonsGUI
(in
Pmv.sdCommands
)
createGeometries()
(in
ComputeTraceCommand
)
CheckForCloseContactsGUICommandGUI
(in
Pmv.repairCommands
)
colorPalette
(in
Pmv
)
createGeometries()
(in
loadVect
)
checkForCloseContactsGUICommandGuiDescr
(in
Pmv.repairCommands
)
ColorPalette
(in
Pmv.colorPalette
)
createIndexWidgets()
(in
DefinePdbSpecifications
)
CheckForMissingAtoms
(in
Pmv.repairCommands
)
colorPaletteCommands
(in
Pmv
)
createNodesSets()
(in
SuperimposeAtomsGUICommand
)
CheckForMissingAtomsGUICommand
(in
Pmv.repairCommands
)
ColorPaletteFunction
(in
Pmv.colorPalette
)
createPairs()
(in
SuperimposeAtomsGUICommand
)
CheckForMissingAtomsGUICommandGUI
(in
Pmv.repairCommands
)
colorProp()
(in
ColorByProperties
)
createPortsForPositionalArgs()
(in
PmvRunCommand
)
checkForMissingAtomsGUICommandGuiDescr
(in
Pmv.repairCommands
)
ColorShapely
(in
Pmv.colorCommands
)
createTkVar()
(in
NodeWithCheckbuttons
)
checkForPossibleH()
(in
GetHydrogenBondDonors
)
ColorShapelyGUI
(in
Pmv.colorCommands
)
createWidgets()
(in
ColorMapGUI
)
checkForRemoteResults()
(in
APBSSetup
)
colorShapelyGuiDescr
(in
Pmv.colorCommands
)
createX()
(in
OrthoSliceCommand
)
checkForResults()
(in
SetupPdb2Pqr
)
colResRASColDescr
(in
Pmv.dashboard
)
createY()
(in
OrthoSliceCommand
)
CheckResidueChargesCommand
(in
Pmv.editCommands
)
colResSHAColDescr
(in
Pmv.dashboard
)
createZ()
(in
OrthoSliceCommand
)
checkStartOk()
(in
EditAtomChargeGUICommand
)
colSSColDescr
(in
Pmv.dashboard
)
CRITICAL_DEPENDENCIES
(in
Pmv
)
Choose_Molecule_3
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
column_cb()
(in
DefinePdbSpecifications
)
cross()
(in
Pmv.Ribbon
)
chooseColor_cb()
(in
LabelByProperties
)
ColumnDescriptors
(in
Pmv.dashboard
)
Ctrl_cb()
(in
MVIcomGUI
)
chooseH()
(in
AddHBondHydrogens
)
Combo_Selection()
(in
APBSDisplay_Isocontours
)
CurrentAmber94
(in
Pmv.amberCommands
)
clean()
(in
ComputeSecondaryStructureCommand
)
command_cb()
(in
MVSetInteractiveCmd
)
cursel_cb()
(in
ComputeSplineGUICommand
)
cleanup()
(in
ColorCommand
)
commandList
(in
Pmv.APBSCommands
)
cursel_cb()
(in
CustomSplineCommand
)
cleanup()
(in
DisplayCPK
)
commandList
(in
Pmv.SLCommands
)
CustomSplineCommand
(in
Pmv.splineCommands
)
cleanup()
(in
DisplayCPKByProperty
)
commandList
(in
Pmv.aboutCommands
)
CustomSplineGUI
(in
Pmv.splineCommands
)
cleanup()
(in
DisplayLines
)
commandList
(in
Pmv.amberCommands
)
customSplineGuiDescr
(in
Pmv.splineCommands
)
cleanup()
(in
DisplaySticksAndBalls
)
commandList
(in
Pmv.bondsCommands
)
CustomTraceCommand
(in
Pmv.traceCommands
)
cleanup()
(in
ColorMolIndexedPolygons
)
commandList
(in
Pmv.coarseMolSurfaceCommands
)
CustomTraceGUI
(in
Pmv.traceCommands
)
cleanup()
(in
ColorBySSElementType
)
commandList
(in
Pmv.colorCommands
)
customTraceGuiDescr
(in
Pmv.traceCommands
)
cleanup()
(in
DisplayExtrudedSSCommand
)
commandList
(in
Pmv.colorPaletteCommands
)
cleanUpCrossSet()
(in
DisplayInteractionsCommand
)
commandList
(in
Pmv.controlPanelCommands
)
D
dashboard
(in
Pmv
)
displaySSColDescr
(in
Pmv.dashboard
)
doit()
(in
AddHBondCommandGUICommand
)
Dashboard
(in
Pmv.dashboardCommands
)
DisplaySSGUI
(in
Pmv.secondaryStructureCommands
)
doit()
(in
AddHBondHydrogens
)
Dashboard_GUI
(in
Pmv.dashboardCommands
)
displaySSGuiDescr
(in
Pmv.secondaryStructureCommands
)
doit()
(in
AddHBondHydrogensGUICommand
)
dashboardCommands
(in
Pmv
)
DisplaySSSB
(in
Pmv.displayCommands
)
doit()
(in
BuildHydrogenBonds
)
DashboardSuspendRedraw
(in
Pmv.dashboardCommands
)
displaySSSBDescr
(in
Pmv.displayCommands
)
doit()
(in
BuildHydrogenBondsGUICommand
)
data
(in
BindGeomToMolecularFragmentBase
)
DisplaySSSBGUI
(in
Pmv.displayCommands
)
doit()
(in
DisplayHBonds
)
DavidGoodsell
(in
Pmv.pmvPalettes
)
DisplaySticksAndBalls
(in
Pmv.displayCommands
)
doit()
(in
ExtrudeHydrogenBonds
)
DavidGoodsellSortedKeys
(in
Pmv.pmvPalettes
)
DisplaySticksAndBallsGUI
(in
Pmv.displayCommands
)
doit()
(in
GetHydrogenBondAcceptors
)
decimate()
(in
Pmv.computeIsovalue
)
displaySticksAndBallsGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
GetHydrogenBondDonors
)
decreaseCts()
(in
MVSelectFromStringCommand
)
DisplayTraceCommand
(in
Pmv.traceCommands
)
doit()
(in
GetHydrogenBondEnergies
)
decreaseCts()
(in
StringSelectorGUI
)
DisplayTraceGUI
(in
Pmv.traceCommands
)
doit()
(in
LimitHydrogenBonds
)
defineColSpecs_cb()
(in
DefinePdbSpecifications
)
displayTraceGuiDescr
(in
Pmv.traceCommands
)
doit()
(in
ReadIntermolHBonds
)
defineIndSpecs_cb()
(in
DefinePdbSpecifications
)
displayValue()
(in
NodeWithCheckbuttons
)
doit()
(in
RemoveHBondCommand
)
DefinePdbSpecifications
(in
Pmv.genparserCommands
)
dist()
(in
ExtrudeObject
)
doit()
(in
RemoveHBondCommandGUICommand
)
DefinePdbSpecificationsGUI
(in
Pmv.genparserCommands
)
dist()
(in
AddHBondHydrogens
)
doit()
(in
ShowHBDonorsAcceptors
)
definePdbSpecificationsGuiDescr
(in
Pmv.genparserCommands
)
dist()
(in
Pmv.hbondCommands
)
doit()
(in
ShowHydrogenBonds
)
delete_all_widgets()
(in
AutoGridSliceGui
)
distribution()
(in
Grid
)
doit()
(in
WriteAssemblyHBonds
)
delete_all_widgets()
(in
AutoGridSurfaceGui
)
divide
(in
Pmv.Grid
)
doit()
(in
WriteIntermolHBonds
)
Delete_cb()
(in
LimitHydrogenBonds
)
divide_safe
(in
Pmv.Grid
)
doit()
(in
BugReportCommand
)
delete_cb()
(in
SuperImposeAtomsGUICommand
)
do_1()
(in
Kill
)
doit()
(in
mailingListsCommand
)
delete_cb()
(in
SuperimposeAtomsGUICommand
)
do_leave()
(in
Kill
)
doit()
(in
MVBindCmdToKey
)
delete_selected_cb()
(in
BugReportCommand
)
do_motion()
(in
Kill
)
doit()
(in
MVSetInteractiveCmd
)
DeleteAllMolecules
(in
Pmv.deleteCommands
)
do_update()
(in
Kill
)
doit()
(in
LabelByExpression
)
DeleteAllMoleculesGUI
(in
Pmv.deleteCommands
)
DockDashboard
(in
Pmv.dashboardCommands
)
doit()
(in
LabelByProperties
)
deleteAllMoleculesGuiDescr
(in
Pmv.deleteCommands
)
doit()
(in
APBSDisplayOrthoSlice
)
doit()
(in
MeasureAngle
)
DeleteAtomSet
(in
Pmv.deleteCommands
)
doit()
(in
APBSDisplay_Isocontours
)
doit()
(in
MeasureAngleGUICommand
)
DeleteAtomSetGUI
(in
Pmv.deleteCommands
)
doit()
(in
APBSLoad_Profile
)
doit()
(in
MeasureDistance
)
deleteAtomSetGuiDescr
(in
Pmv.deleteCommands
)
doit()
(in
APBSMap_Potential_to_MSMS
)
doit()
(in
MeasureDistanceCtrlGUICommand
)
DeleteAutoGrid
(in
Pmv.gridCommands
)
doit()
(in
APBSPreferences
)
doit()
(in
MeasureDistanceGUICommand
)
DeleteAutoGridGUI
(in
Pmv.gridCommands
)
doit()
(in
APBSRun
)
doit()
(in
MeasureTorsion
)
deleteAutoGridGUIDescr
(in
Pmv.gridCommands
)
doit()
(in
APBSSave_Profile
)
doit()
(in
MeasureTorsionGUICommand
)
deleteCB()
(in
IGraph
)
doit()
(in
APBSSetup
)
doit()
(in
AssignBuriedAreas
)
deleteCommands
(in
Pmv
)
doit()
(in
APBSVolumeRender
)
doit()
(in
ComputeMSMS
)
deleteGeometries()
(in
PmvViewer
)
doit()
(in
APBSWrite_APBS_Parameter_File
)
doit()
(in
ComputeMSMSApprox
)
DeleteHydrogens
(in
Pmv.deleteCommands
)
doit()
(in
RestoreBsptCommand
)
doit()
(in
DisplayBuriedTriangles
)
DeleteHydrogensGUI
(in
Pmv.deleteCommands
)
doit()
(in
SLCommand
)
doit()
(in
DisplayIntermolecularBuriedTriangles
)
deleteHydrogensGuiDescr
(in
Pmv.deleteCommands
)
doit()
(in
SaveBsptCommand
)
doit()
(in
DisplayMSMS
)
deleteMol()
(in
DeleteAllMolecules
)
doit()
(in
ConstrainAtomsAmber94
)
doit()
(in
IdentifyBuriedVertices
)
deleteMol()
(in
DeleteMolecule
)
doit()
(in
FixAmberHAtomNamesCommand
)
doit()
(in
MsmsNPR
)
DeleteMolecule
(in
Pmv.deleteCommands
)
doit()
(in
FixAmberHAtomNamesGUICommand
)
doit()
(in
ReadMSMS
)
deleteMolecule()
(in
MolFragNodeWithButtons
)
doit()
(in
FixAmberResNamesAndOrderAtomsCommand
)
doit()
(in
SaveMSMS
)
deleteMolecule_cb()
(in
DeleteMolecule
)
doit()
(in
FreezeAtomsAmber94
)
doit()
(in
GoCoarserFiner
)
DeleteMoleculeGUI
(in
Pmv.deleteCommands
)
doit()
(in
MinimizeAmber94
)
doit()
(in
Multires
)
deleteMoleculeGuiDescr
(in
Pmv.deleteCommands
)
doit()
(in
MolecularDynamicsAmber94
)
doit()
(in
goCoarserFiner
)
deselectall_cb()
(in
ColorCommand
)
doit()
(in
PlayMolecularDynamicsTrjAmber94
)
doit()
(in
MVCenterOnNodes
)
destroy()
(in
APBSStatusPortTypeSoapBindingSOAP
)
doit()
(in
SetMDOptsAmber94
)
doit()
(in
MVPrintNodeNames
)
destroy()
(in
About
)
doit()
(in
SetMinimOptsAmber94
)
doit()
(in
MVSetIcomLevel
)
destroy()
(in
FloatDashboard
)
doit()
(in
SetupAmber94
)
doit()
(in
MVSetSelectionLevel
)
destroyInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
doit()
(in
AddBondsCommand
)
doit()
(in
SetupPdb2Pqr
)
destroyRequest
(in
Pmv.APBSService_services
)
doit()
(in
AddBondsGUICommand
)
doit()
(in
AddOXT
)
destroyRequestWrapper
(in
Pmv.APBSService_services
)
doit()
(in
BuildBondsByDistance
)
doit()
(in
AddOXTGUICommand
)
destroyResponse
(in
Pmv.APBSService_services
)
doit()
(in
RemoveBondsCommand
)
doit()
(in
CheckForCloseContacts
)
destroyResponseWrapper
(in
Pmv.APBSService_services
)
doit()
(in
RemoveBondsGUICommand
)
doit()
(in
CheckForCloseContactsGUICommand
)
Dial_6
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
doit()
(in
coarseMolSurface
)
doit()
(in
CheckForMissingAtoms
)
dialog()
(in
ComputeTraceCommand
)
doit()
(in
ColorByExpression
)
doit()
(in
CheckForMissingAtomsGUICommand
)
disableCallbackFreq()
(in
MinimizeAmber94
)
doit()
(in
ColorByInstance
)
doit()
(in
EditHistHydrogens
)
disableCallbackFreq()
(in
MolecularDynamicsAmber94
)
doit()
(in
ColorByProperties
)
doit()
(in
EditHistHydrogensGUICommand
)
disableThumbWheel()
(in
coarseMolSurface
)
doit()
(in
ColorCommand
)
doit()
(in
ModifyCTerminus
)
discardSet()
(in
SLGeom
)
doit()
(in
ColorFromPalette
)
doit()
(in
ModifyNTerminus
)
dismiss()
(in
APBSDisplay_Isocontours
)
doit()
(in
EditColorPaletteByAtomType
)
doit()
(in
ModifyTermini
)
dismiss()
(in
APBSSetup
)
doit()
(in
AddDashboardCmd
)
doit()
(in
RepairMissingAtoms
)
dismiss()
(in
RemoveBondsGUICommand
)
doit()
(in
DashboardSuspendRedraw
)
doit()
(in
RepairMissingAtomsGUICommand
)
dismiss()
(in
coarseMolSurface
)
doit()
(in
DockDashboard
)
doit()
(in
ApplyTransformations
)
dismiss()
(in
RemoveHBondCommandGUICommand
)
doit()
(in
FloatDashboard
)
doit()
(in
ColorMolIndexedPolygons
)
dismiss_cb()
(in
SLCommand
)
doit()
(in
ShowDashboard
)
doit()
(in
DisplayMolIndexedPolygons
)
dismiss_cb()
(in
ColorCommand
)
doit()
(in
DeleteAllMolecules
)
doit()
(in
ReadMolIndexedPolygons
)
Dismiss_cb()
(in
CheckChargesGUICommand
)
doit()
(in
DeleteAtomSet
)
doit()
(in
ReadTransformations
)
dismiss_cb()
(in
PDBWriter
)
doit()
(in
DeleteMolecule
)
doit()
(in
SelectVertex
)
dismiss_cb()
(in
readFromWebCommand
)
doit()
(in
BindGeomToMolecularFragment
)
doit()
(in
ColorBySSElementType
)
dismiss_cb()
(in
DefinePdbSpecifications
)
doit()
(in
DisplayBackboneTrace
)
doit()
(in
ComputeSecondaryStructureCommand
)
dismiss_cb()
(in
DisplayHBonds
)
doit()
(in
DisplayBoundGeom
)
doit()
(in
DisplayExtrudedSSCommand
)
dismiss_cb()
(in
ExtrudeHydrogenBonds
)
doit()
(in
DisplayCPK
)
doit()
(in
ExtrudeSecondaryStructureCommand
)
dismiss_cb()
(in
LimitHydrogenBonds
)
doit()
(in
DisplayCPKByProperty
)
doit()
(in
RibbonCommand
)
dismiss_cb()
(in
ShowHydrogenBonds
)
doit()
(in
DisplayInteractionsCommand
)
doit()
(in
MVClearSelection
)
dismiss_cb()
(in
BugReportCommand
)
doit()
(in
DisplayLines
)
doit()
(in
MVCreateSetIfNeeded
)
dismiss_cb()
(in
mailingListsCommand
)
doit()
(in
DisplaySSSB
)
doit()
(in
MVDirectSelectCommand
)
dismiss_cb()
(in
LabelByProperties
)
doit()
(in
DisplaySticksAndBalls
)
doit()
(in
MVInvertSelection
)
dismiss_cb()
(in
CheckForCloseContactsGUICommand
)
doit()
(in
ShowMolecules
)
doit()
(in
MVSaveSetCommand
)
dismiss_cb()
(in
CheckForMissingAtomsGUICommand
)
doit()
(in
AddHydrogensCommand
)
doit()
(in
MVSelectCommand
)
dismiss_cb()
(in
EditHistHydrogensGUICommand
)
doit()
(in
AddHydrogensGUICommand
)
doit()
(in
MVSelectFromStringCommand
)
Dismiss_cb()
(in
MVSelectFromStringCommand
)
doit()
(in
AddKollmanChargesCommand
)
doit()
(in
MVSelectSetCommand
)
dismiss_cb()
(in
SuperImposeAtomsGUICommand
)
doit()
(in
AddKollmanChargesGUICommand
)
doit()
(in
MVSelectSphericalRegion
)
dismiss_cb()
(in
SuperimposeAtomsGUICommand
)
doit()
(in
AssignAtomsRadiiCommand
)
doit()
(in
SetQuaternion
)
dismiss_cb()
(in
PlayTrajectoryCommand
)
doit()
(in
AverageChargeErrorCommand
)
doit()
(in
SetRelativeTorsion
)
dismiss_smallform_cb()
(in
DefinePdbSpecifications
)
doit()
(in
CheckChargesGUICommand
)
doit()
(in
SetTorsion
)
dismissCB()
(in
Povray
)
doit()
(in
CheckResidueChargesCommand
)
doit()
(in
SetTorsionGUICommand
)
dismissForm()
(in
ShowMolecules
)
doit()
(in
ComputeGasteigerCommand
)
doit()
(in
SetTranslation
)
display()
(in
AutoGrid
)
doit()
(in
ComputeGasteigerGUICommand
)
doit()
(in
ComputeExtrudeSplineCommand
)
display()
(in
Grid
)
doit()
(in
EditAtomChargeGUICommand
)
doit()
(in
ComputeSplineCommand
)
display()
(in
GridPointSet
)
doit()
(in
EditAtomTypeCommand
)
doit()
(in
ComputeSplineGUICommand
)
display()
(in
ColorPalette
)
doit()
(in
EditAtomTypeGUICommand
)
doit()
(in
CustomSplineCommand
)
DisplayBackboneTrace
(in
Pmv.displayCommands
)
doit()
(in
FixHydrogenAtomNamesCommand
)
doit()
(in
DisplayExtrudedSplineCommand
)
DisplayBackboneTraceGUI
(in
Pmv.displayCommands
)
doit()
(in
FixHydrogenAtomNamesGUICommand
)
doit()
(in
DisplaySplineAsLineCommand
)
displayBackboneTraceGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
MergeFieldsCommand
)
doit()
(in
ExtrudeSplineCommand
)
DisplayBoundGeom
(in
Pmv.displayCommands
)
doit()
(in
MergeLonePairsCommand
)
doit()
(in
SuperImposeAtomsCommand
)
DisplayBoundGeomGUI
(in
Pmv.displayCommands
)
doit()
(in
MergeLonePairsGUICommand
)
doit()
(in
SuperImposeAtomsGUICommand
)
displayBox()
(in
Grid
)
doit()
(in
MergeNPHsCommand
)
doit()
(in
SuperimposeCoordsCommand
)
displayBuriedIntermolecularTrianglesGuiDescr
(in
Pmv.msmsCommands
)
doit()
(in
MergeNPHsGUICommand
)
doit()
(in
FreezeAtomsCommand
)
DisplayBuriedTriangles
(in
Pmv.msmsCommands
)
doit()
(in
MergeSetsCommand
)
doit()
(in
SuperimposeAtomsCommand
)
DisplayBuriedTrianglesGUI
(in
Pmv.msmsCommands
)
doit()
(in
SetChargeCommand
)
doit()
(in
SuperimposeCommand
)
displayBuriedTrianglesGuiDescr
(in
Pmv.msmsCommands
)
doit()
(in
SplitNodesCommand
)
doit()
(in
TransformAtomsCommand
)
DisplayCommand
(in
Pmv.displayCommands
)
doit()
(in
SplitNodesGUICommand
)
doit()
(in
ComputeExtrudeTraceCommand
)
displayCommands
(in
Pmv
)
doit()
(in
TypeAtomsCommand
)
doit()
(in
ComputeTraceCommand
)
DisplayCPK
(in
Pmv.displayCommands
)
doit()
(in
TypeBondsCommand
)
doit()
(in
CustomTraceCommand
)
DisplayCPKByProperty
(in
Pmv.displayCommands
)
doit()
(in
ComputeSheet2DCommand
)
doit()
(in
DisplayTraceCommand
)
DisplayCPKByPropertyGUI
(in
Pmv.displayCommands
)
doit()
(in
DisplayPath3DCommand
)
doit()
(in
ExtrudeTraceCommand
)
displayCPKByPropertyGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
Nucleic_Acids_properties
)
doit()
(in
OpenTrajectoryCommand
)
displayCPKColDescr
(in
Pmv.dashboard
)
doit()
(in
GROReader
)
doit()
(in
PlayTrajectoryCommand
)
DisplayCPKGUI
(in
Pmv.displayCommands
)
doit()
(in
MMCIFReader
)
doit()
(in
loadVUFile
)
displayCPKGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
MOL2Reader
)
doit()
(in
loadVect
)
DisplayExtrudedSplineCommand
(in
Pmv.splineCommands
)
doit()
(in
MoleculeReader
)
doit()
(in
ExportSets
)
DisplayExtrudedSplineCommandGUI
(in
Pmv.splineCommands
)
doit()
(in
PDBQReader
)
doit()
(in
VisionCommand
)
DisplayExtrudedSSCommand
(in
Pmv.secondaryStructureCommands
)
doit()
(in
PDBQSReader
)
doit()
(in
WriteColoredM
)
DisplayHBonds
(in
Pmv.hbondCommands
)
doit()
(in
PDBQSWriter
)
doit()
(in
WriteSTL
)
DisplayHBondsAsCylinders
(in
Pmv.hbondCommands
)
doit()
(in
PDBQTReader
)
done()
(in
GoCoarserFiner
)
DisplayHBondsAsCylindersGUI
(in
Pmv.hbondCommands
)
doit()
(in
PDBQTWriter
)
done()
(in
Multires
)
DisplayHBondsAsCylindersGuiDescr
(in
Pmv.hbondCommands
)
doit()
(in
PDBQWriter
)
done()
(in
goCoarserFiner
)
DisplayHBondsAsSpheres
(in
Pmv.hbondCommands
)
doit()
(in
PDBReader
)
done_cb()
(in
RemoveBondsGUICommand
)
DisplayHBondsAsSpheresGUI
(in
Pmv.hbondCommands
)
doit()
(in
PDBWriter
)
done_cb()
(in
MoleculeChooser
)
DisplayHBondsAsSpheresGuiDescr
(in
Pmv.hbondCommands
)
doit()
(in
PQRReader
)
done_cb()
(in
RemoveHBondCommandGUICommand
)
DisplayInteractionsCommand
(in
Pmv.displayCommands
)
doit()
(in
PQRWriter
)
Done_cb()
(in
SetTorsionGUICommand
)
DisplayInteractionsCommandGUI
(in
Pmv.displayCommands
)
doit()
(in
STLWriter
)
doSetOperation()
(in
SLCommand
)
displayInteractionsCommandGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
SaveMMCIF
)
doSlice()
(in
Grid
)
DisplayIntermolecularBuriedTriangles
(in
Pmv.msmsCommands
)
doit()
(in
VRML2Writer
)
doSlice2()
(in
Grid
)
DisplayIntermolecularBuriedTrianglesGUI
(in
Pmv.msmsCommands
)
doit()
(in
readFromWebCommand
)
Download()
(in
APBSSetup
)
displayIsocontourGUI
(in
Pmv.grid3DCommands
)
doit()
(in
GenPDBReader
)
Download_and_Merge()
(in
APBSSetup
)
DisplayLines
(in
Pmv.displayCommands
)
doit()
(in
AddRemove
)
drawBar()
(in
IGraph
)
displayLinesColDescr
(in
Pmv.dashboard
)
doit()
(in
Grid3DCommands
)
drawHue()
(in
ColorMapGUI
)
DisplayLinesGUI
(in
Pmv.displayCommands
)
doit()
(in
IsocontourCommand
)
drawOpacity()
(in
ColorMapGUI
)
displayLinesGuiDescr
(in
Pmv.displayCommands
)
doit()
(in
OrthoSliceCommand
)
drawResidues()
(in
DisplayPath3DCommand
)
DisplayMolIndexedPolygons
(in
Pmv.sdCommands
)
doit()
(in
VolRenCommand
)
drawSaturation()
(in
ColorMapGUI
)
DisplayMolIndexedPolygonsGUI
(in
Pmv.sdCommands
)
doit()
(in
readAnyGrid
)
drawSphere()
(in
MVSelectSphericalRegion
)
DisplayMSMS
(in
Pmv.msmsCommands
)
doit()
(in
AutoGridIsoSurface
)
drawValue()
(in
ColorMapGUI
)
displayMSMSColDescr
(in
Pmv.dashboard
)
doit()
(in
AutoGridReader
)
drop_cb()
(in
MoleculeViewer
)
DisplayMSMSGUI
(in
Pmv.msmsCommands
)
doit()
(in
DXReader
)
dump()
(in
MVSelectCommand
)
DisplayPath3DCommand
(in
Pmv.extrusionCommands
)
doit()
(in
DeleteAutoGrid
)
DX
(in
Pmv.Grid
)
DisplayPathGUI
(in
Pmv.extrusionCommands
)
doit()
(in
GetOrthoSlice
)
DXReader
(in
Pmv.gridCommands
)
displaySandBColDescr
(in
Pmv.dashboard
)
doit()
(in
GridReader
)
DXReaderGUI
(in
Pmv.gridCommands
)
DisplaySplineAsLineCommand
(in
Pmv.splineCommands
)
doit()
(in
SetIsovalue
)
DisplaySplineAsLineCommandGUI
(in
Pmv.splineCommands
)
doit()
(in
AddHBondCommand
)
E
e
(in
Pmv.Grid
)
EnergyAndForceOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
extractOrderList()
(in
Pmv.Grid
)
ed()
(in
Pmv
)
entries_update()
(in
myTF
)
extractSpecs()
(in
DefinePdbSpecifications
)
EditAtomChargeGUICommand
(in
Pmv.editCommands
)
entry_color_set()
(in
myTF
)
extractSpecs()
(in
GenPDBReader
)
EditAtomChargeGUICommandGUI
(in
Pmv.editCommands
)
entry_value_set()
(in
myTF
)
ExtrudeHydrogenBonds
(in
Pmv.hbondCommands
)
editAtomChargeGUICommandGuiDescr
(in
Pmv.editCommands
)
entryKeywords
(in
StringSelectorGUI
)
ExtrudeHydrogenBondsGUI
(in
Pmv.hbondCommands
)
EditAtomTypeCommand
(in
Pmv.editCommands
)
entryValidate()
(in
coarseMolSurface
)
ExtrudeHydrogenBondsGuiDescr
(in
Pmv.hbondCommands
)
EditAtomTypeGUICommand
(in
Pmv.editCommands
)
entryValidate()
(in
ColorByProperties
)
ExtrudeNA()
(in
Pmv.extruder
)
EditAtomTypeGUICommandGUI
(in
Pmv.editCommands
)
entryValidate()
(in
ComputeMSMS
)
ExtrudeObject
(in
Pmv.extruder
)
editAtomTypeGUICommandGuiDescr
(in
Pmv.editCommands
)
entryValidate()
(in
loadVect
)
extruder
(in
Pmv
)
EditColorPaletteByAtomType
(in
Pmv.colorPaletteCommands
)
equal
(in
Pmv.Grid
)
ExtrudeSecondaryStructureCommand
(in
Pmv.secondaryStructureCommands
)
EditColorPaletteByAtomTypeGUI
(in
Pmv.colorPaletteCommands
)
equalObj
(in
Pmv.Grid
)
ExtrudeSplineCommand
(in
Pmv.splineCommands
)
editColumn()
(in
TreeViewWithCheckbuttons
)
EquationTypeType_Def
(in
nbcr_sdsc_edu_apbs_types
)
ExtrudeSplineCommandGUI
(in
Pmv.splineCommands
)
editCommands
(in
Pmv
)
eval_cb()
(in
ColorByExpression
)
ExtrudeSSElt
(in
Pmv.extruder
)
editHIS()
(in
EditHistHydrogens
)
execCmd()
(in
MVInteractiveCmdCaller
)
ExtrudeSSGUI
(in
Pmv.secondaryStructureCommands
)
EditHistHydrogens
(in
Pmv.repairCommands
)
execute()
(in
MSMSColumnDescriptor
)
extrudeSSGuiDescr
(in
Pmv.secondaryStructureCommands
)
EditHistHydrogensGUICommand
(in
Pmv.repairCommands
)
exit_cb()
(in
VisionCommand
)
ExtrudeTraceCommand
(in
Pmv.traceCommands
)
EditHistHydrogensGUICommandGUI
(in
Pmv.repairCommands
)
exp
(in
Pmv.Grid
)
ExtrudeTraceGUI
(in
Pmv.traceCommands
)
editPairs_cb()
(in
SuperImposeAtomsGUICommand
)
expandNodes()
(in
MoleculeViewer
)
extrudeTraceGuiDescr
(in
Pmv.traceCommands
)
editResCharges()
(in
CheckChargesGUICommand
)
expandParents()
(in
MolFragTreeWithButtons
)
extrusionCommands
(in
Pmv
)
ElectrostaticPotentialInputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
ExportSets
(in
Pmv.visionCommands
)
enableThumbWheel()
(in
coarseMolSurface
)
ExportSetsGUI
(in
Pmv.visionCommands
)
F
f
(in
Pmv.Ribbon
)
findGroups()
(in
GridPointSet
)
FixHydrogenAtomNamesGUICommand
(in
Pmv.editCommands
)
fabs
(in
Pmv.Grid
)
findGroups()
(in
Pmv.Grid
)
FixHydrogenAtomNamesGUICommandGUI
(in
Pmv.editCommands
)
FaultType_Def
(in
nbcr_sdsc_edu_apbs_types
)
findIsoValueMol()
(in
Pmv.computeIsovalue
)
fixHydrogenAtomNamesGUICommandGuiDescr
(in
Pmv.editCommands
)
FieldNames
(in
Pmv.genparserCommands
)
findItemFromID()
(in
MVDirectSelectCommand
)
fixIDS()
(in
SplitNodesGUICommand
)
FieldNameType_Def
(in
nbcr_sdsc_edu_molecule_types
)
findItemFromName()
(in
MVDirectSelectCommand
)
fixIDS()
(in
WriteAssemblyHBonds
)
fileCommands
(in
Pmv
)
findMaxGrid()
(in
Grid
)
fixNormals()
(in
ExtrudeObject
)
FileFormatType_Def
(in
nbcr_sdsc_edu_apbs_types
)
findMaxValue()
(in
Grid
)
fixNterminus()
(in
AddKollmanChargesCommand
)
fileinScrolledText_cb()
(in
DefinePdbSpecifications
)
findMinGrid()
(in
Grid
)
fixValues()
(in
ComputeMSMS
)
FileOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
findMinValue()
(in
Grid
)
flag
(in
Pmv.APBSCommands
)
filter()
(in
Set
)
findNeighbours()
(in
Pmv.Grid
)
FlagCheck
(in
Pmv
)
filterAcceptors()
(in
GetHydrogenBondAcceptors
)
findOneGroup()
(in
Pmv.Grid
)
FLOAT
(in
ColorPalette
)
find_list()
(in
readFromWebCommand
)
findOrder()
(in
Grid
)
float
Find_pmvrc()
(in
Pmv.moleculeViewer
)
findPickedAtoms()
(in
MoleculeViewer
)
Float0
(in
Pmv.Grid
)
findAboveEqualGrids()
(in
Grid
)
findPickedBonds()
(in
MoleculeViewer
)
Float16
(in
Pmv.Grid
)
findAboveEqualValues()
(in
Grid
)
findTopGrids()
(in
Grid
)
Float32
(in
Pmv.Grid
)
findAboveGrids()
(in
Grid
)
findTopValues()
(in
Grid
)
Float64
(in
Pmv.Grid
)
findAboveValues()
(in
Grid
)
findUniqueAtomSet()
(in
BindGeomToMolecularFragment
)
Float8
(in
Pmv.Grid
)
findBelowEqualGrids()
(in
Grid
)
fineResolutionX()
(in
APBSSetup
)
FloatDashboard
(in
Pmv.dashboardCommands
)
findBelowEqualValues()
(in
Grid
)
fineResolutionY()
(in
APBSSetup
)
floor
(in
Pmv.Grid
)
findBelowGrids()
(in
Grid
)
fineResolutionZ()
(in
APBSSetup
)
floor_divide
(in
Pmv.Grid
)
findBelowValues()
(in
Grid
)
FixAmberHAtomNamesCommand
(in
Pmv.amberCommands
)
fmod
(in
Pmv.Grid
)
findBetweenEqualGrids()
(in
Grid
)
FixAmberHAtomNamesGUICommand
(in
Pmv.amberCommands
)
forgetWidgets()
(in
GetOrthoSlice
)
findBetweenEqualValues()
(in
Grid
)
FixAmberHAtomNamesGUICommandGUI
(in
Pmv.amberCommands
)
format_list
(in
Kill
)
findBetweenGrids()
(in
Grid
)
fixAmberHAtomNamesGUICommandGuiDescr
(in
Pmv.amberCommands
)
FreezeAtomsAmber94
(in
Pmv.amberCommands
)
findBetweenValues()
(in
Grid
)
FixAmberResNamesAndOrderAtomsCommand
(in
Pmv.amberCommands
)
FreezeAtomsAmber94CommandGUI
(in
Pmv.amberCommands
)
findBottomGrids()
(in
Grid
)
fixCharges()
(in
EditHistHydrogens
)
FreezeAtomsCommand
(in
Pmv.superimposeCommandsNew
)
findBottomValues()
(in
Grid
)
fixCterminus()
(in
AddKollmanChargesCommand
)
funcLabel
(in
ColorByExpression
)
findClosestAtoms()
(in
BindGeomToMolecularFragment
)
fixCysRes()
(in
AddKollmanChargesCommand
)
funcLabel
(in
LabelByExpression
)
findFirstMatchNodeFromName()
(in
TreeViewWithCheckbuttons
)
fixHisRes()
(in
AddKollmanChargesCommand
)
funcText
(in
ColorByExpression
)
findGridNumbers()
(in
Grid
)
FixHydrogenAtomNamesCommand
(in
Pmv.editCommands
)
funcText
(in
LabelByExpression
)
G
gapValidateFunction()
(in
ExtrudeSecondaryStructureCommand
)
getIfd()
(in
DisplayHBondsAsCylinders
)
guiCallback()
(in
SetMDOptsAmber94
)
Generic_22
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
getIfd()
(in
DisplayHBondsAsSpheres
)
guiCallback()
(in
SetMinimOptsAmber94
)
genparserCommands
(in
Pmv
)
getImage()
(in
About
)
guiCallback()
(in
SetupAmber94
)
GenPDBReader
(in
Pmv.genparserCommands
)
getIndex()
(in
TorsionHistory
)
guiCallback()
(in
AddBondsGUICommand
)
GenPDBReaderGUI
(in
Pmv.genparserCommands
)
getIsoContour()
(in
Grid
)
guiCallback()
(in
BuildBondsByDistance
)
genPDBReaderGuiDescr
(in
Pmv.genparserCommands
)
getItems()
(in
MoleculeViewer
)
guiCallback()
(in
RemoveBondsGUICommand
)
GenSurf_2
(in
Pmv.VisionInterface.APBSIsoContour_net
)
getLastUsedValues()
(in
DisplayCommand
)
guiCallback()
(in
coarseMolSurface
)
GenSurf_3
(in
Pmv.VisionInterface.APBSIsoContour_net
)
getLastUsedValues()
(in
LabelByProperties
)
guiCallback()
(in
ColorByExpression
)
get()
(in
MoleculeListChooser
)
getLevelName()
(in
MVSetInteractiveCmd
)
guiCallback()
(in
ColorByProperties
)
get()
(in
StringSelectorGUI
)
getMap()
(in
AutoGridSurfaceGui
)
guiCallback()
(in
ColorCommand
)
Get_apbsIn()
(in
APBSOutputType_Def
)
getMol_cb()
(in
PlayTrajectoryCommand
)
guiCallback()
(in
ColorFromPalette
)
Get_apbsOut()
(in
BlockingOutputType_Def
)
getMolFromName()
(in
MoleculeViewer
)
guiCallback()
(in
EditColorPaletteByAtomType
)
Get_atom()
(in
MoleculeType_Def
)
getMolSet()
(in
MoleculeChooser
)
guiCallback()
(in
ControlPanel
)
Get_atomicNumber()
(in
AtomType_Def
)
getMolVal()
(in
ApplyTransformations
)
guiCallback()
(in
Dashboard
)
Get_atomName()
(in
AtomType_Def
)
getMolVal()
(in
MVDirectSelectCommand
)
guiCallback()
(in
DeleteAllMolecules
)
Get_atomNumber()
(in
AtomType_Def
)
getMolVal()
(in
MVSelectFromStringCommand
)
guiCallback()
(in
DeleteAtomSet
)
Get_baseURL()
(in
StatusOutputType_Def
)
getMolVal()
(in
StringSelectorGUI
)
guiCallback()
(in
DeleteHydrogens
)
Get_boundaryConditions()
(in
CalculationParamsType_Def
)
GetMSMSGeom
(in
Pmv.VisionInterface.PmvNodes
)
guiCallback()
(in
DeleteMolecule
)
Get_calculationParams()
(in
ParameterType_Def
)
getNodeDefinitionSourceCode()
(in
PmvMolecule
)
guiCallback()
(in
BindGeomToMolecularFragment
)
Get_centerCoords()
(in
GridType_Def
)
getNodeDefinitionSourceCode()
(in
PmvSetNode
)
guiCallback()
(in
DisplayBoundGeom
)
Get_centerMol()
(in
GridType_Def
)
getNodes()
(in
ColorCommand
)
guiCallback()
(in
DisplayCPK
)
Get_charge()
(in
IonType_Def
)
getNodes()
(in
NodeWithCheckbuttons
)
guiCallback()
(in
DisplayCPKByProperty
)
Get_charge()
(in
AtomType_Def
)
getNodes()
(in
MolFragNodeWithButtons
)
guiCallback()
(in
DisplayCommand
)
Get_chargeDiscretization()
(in
CalculationParamsType_Def
)
getNodes()
(in
DisplayCommand
)
guiCallback()
(in
DisplayInteractionsCommand
)
Get_coarseGrid()
(in
GridParamsType_Def
)
getNodes()
(in
ColorBySSElementType
)
guiCallback()
(in
DisplayLines
)
Get_code()
(in
StatusOutputType_Def
)
getNodes()
(in
DisplayExtrudedSSCommand
)
guiCallback()
(in
DisplaySticksAndBalls
)
Get_complex()
(in
BindingEnergyInputType_Def
)
getNodesByMolecule()
(in
MoleculeViewer
)
guiCallback()
(in
ShowMolecules
)
Get_concentration()
(in
IonType_Def
)
getObjects()
(in
RemoveBondsGUICommand
)
guiCallback()
(in
AddHydrogensGUICommand
)
Get_coordinates()
(in
AtomType_Def
)
getObjects()
(in
NodeWithCheckbuttons
)
guiCallback()
(in
AddKollmanChargesGUICommand
)
get_description()
(in
BugReportCommand
)
getObjects()
(in
MolFragNodeWithButtons
)
guiCallback()
(in
AssignAtomsRadiiCommand
)
Get_elementName()
(in
AtomType_Def
)
getObjects()
(in
RemoveHBondCommandGUICommand
)
guiCallback()
(in
AverageChargeErrorCommand
)
Get_energyOutput()
(in
CalculationParamsType_Def
)
getObjects()
(in
MVAtomICOM
)
guiCallback()
(in
CheckChargesGUICommand
)
Get_equationType()
(in
CalculationParamsType_Def
)
getObjects()
(in
MVBondICOM
)
guiCallback()
(in
ComputeGasteigerGUICommand
)
Get_fieldName()
(in
AtomType_Def
)
getObjects()
(in
AtomPicker
)
guiCallback()
(in
EditAtomChargeGUICommand
)
Get_fileFormat()
(in
OutputFilesType_Def
)
getObjects()
(in
BondPicker
)
guiCallback()
(in
EditAtomTypeGUICommand
)
Get_fileOutput()
(in
OutputFilesType_Def
)
getObjects()
(in
MsmsPicker
)
guiCallback()
(in
FixHydrogenAtomNamesGUICommand
)
Get_fineGrid()
(in
GridParamsType_Def
)
getObjects()
(in
NewMsmsPicker
)
guiCallback()
(in
MergeFieldsCommand
)
Get_forceOutput()
(in
CalculationParamsType_Def
)
getOpt()
(in
CPCommandEditor
)
guiCallback()
(in
MergeLonePairsGUICommand
)
Get_format()
(in
MoleculeInType_Def
)
GetOrthoSlice
(in
Pmv.gridCommands
)
guiCallback()
(in
MergeNPHsGUICommand
)
Get_format()
(in
MoleculeOutType_Def
)
GetOrthoSliceGUI
(in
Pmv.gridCommands
)
guiCallback()
(in
MergeSetsCommand
)
get_grid_name()
(in
Grid3DCommands
)
getOrthoSliceGuiDescr
(in
Pmv.gridCommands
)
guiCallback()
(in
SetChargeCommand
)
Get_gridParams()
(in
ParameterType_Def
)
getOutputs()
(in
APBSStatusPortTypeSoapBindingSOAP
)
guiCallback()
(in
SplitNodesGUICommand
)
get_icon()
(in
Pmv.grid3DCommands
)
getOutputsInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
guiCallback()
(in
TypeAtomsCommand
)
Get_ion()
(in
PhysicsParamsType_Def
)
getOutputsOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
guiCallback()
(in
TypeBondsCommand
)
get_ith_element()
(in
Grid
)
getOutputsRequest
(in
Pmv.APBSService_services
)
guiCallback()
(in
ComputeSheet2DCommand
)
Get_jobID()
(in
JobSubOutputType_Def
)
getOutputsRequestWrapper
(in
Pmv.APBSService_services
)
guiCallback()
(in
DisplayPath3DCommand
)
Get_length()
(in
GridType_Def
)
getOutputsResponse
(in
Pmv.APBSService_services
)
guiCallback()
(in
Nucleic_Acids_properties
)
Get_mcOut()
(in
APBSOutputType_Def
)
getOutputsResponseWrapper
(in
Pmv.APBSService_services
)
guiCallback()
(in
MoleculeLoader
)
Get_message()
(in
FaultType_Def
)
getPairsFromAlignment()
(in
PmvAlignmentEditor
)
guiCallback()
(in
MoleculeReader
)
Get_message()
(in
StatusOutputType_Def
)
getParser()
(in
Trajectory
)
guiCallback()
(in
PDBQSWriter
)
Get_molecule()
(in
ElectrostaticPotentialInputType_Def
)
getPDBCachedir()
(in
readFromWebCommand
)
guiCallback()
(in
PDBQTWriter
)
Get_molecule()
(in
SolvationEnergyInputType_Def
)
getPickInfo_cb()
(in
MVSelectFromStringCommand
)
guiCallback()
(in
PDBQWriter
)
Get_molecule1()
(in
BindingEnergyInputType_Def
)
getPropsGUI()
(in
ColorMolIndexedPolygons
)
guiCallback()
(in
PDBWriter
)
Get_molecule2()
(in
BindingEnergyInputType_Def
)
getPropValues()
(in
ColorByExpression
)
guiCallback()
(in
PQRWriter
)
Get_moleculeIn()
(in
APBSOutputType_Def
)
getPropValues()
(in
ColorByProperties
)
guiCallback()
(in
STLWriter
)
Get_moleculeName()
(in
MoleculeType_Def
)
getPropValues()
(in
DisplayCPKByProperty
)
guiCallback()
(in
SaveMMCIF
)
Get_moleculeOut()
(in
APBSOutputType_Def
)
getPropValues2()
(in
DisplayCPKByProperty
)
guiCallback()
(in
VRML2Writer
)
Get_moleculeRadius()
(in
MoleculeType_Def
)
getRange()
(in
ApplyTransformations
)
guiCallback()
(in
readFromWebCommand
)
Get_MSMS_Geom_1
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
getRefMol()
(in
RepairMissingAtoms
)
guiCallback()
(in
DefinePdbSpecifications
)
Get_name()
(in
MoleculeInType_Def
)
getRelatedLabelsGeom()
(in
LabelByProperties
)
guiCallback()
(in
GenPDBReader
)
Get_name()
(in
MoleculeOutType_Def
)
getResiduesBySS()
(in
DisplayExtrudedSSCommand
)
guiCallback()
(in
AddRemove
)
Get_numGridPoints()
(in
GridParamsType_Def
)
getResInd()
(in
DisplayPath3DCommand
)
guiCallback()
(in
Grid3DCommands
)
Get_outputFiles()
(in
CalculationParamsType_Def
)
getResIndexFromExtrudeVertex()
(in
ExtrudeSSElt
)
guiCallback()
(in
readAnyGrid
)
Get_overlapFactor()
(in
ParallelParamsType_Def
)
getResIndexFromPts()
(in
ExtrudeSSElt
)
guiCallback()
(in
AutoGridIsoSurface
)
Get_parallelParams()
(in
ParameterType_Def
)
getResPts()
(in
ExtrudeSSElt
)
guiCallback()
(in
AutoGridReader
)
Get_params()
(in
BindingEnergyInputType_Def
)
getResPts()
(in
DisplayPath3DCommand
)
guiCallback()
(in
DXReader
)
Get_params()
(in
ElectrostaticPotentialInputType_Def
)
getResSetsVal()
(in
MVSelectFromStringCommand
)
guiCallback()
(in
DeleteAutoGrid
)
Get_params()
(in
SolvationEnergyInputType_Def
)
getResSetsVal()
(in
StringSelectorGUI
)
guiCallback()
(in
GetOrthoSlice
)
Get_physicsParams()
(in
ParameterType_Def
)
getSecuritymyproxyloginImpl()
(in
SecuritymyproxyloginImplServiceInterface
)
guiCallback()
(in
GridReader
)
get_precise_isovalue()
(in
coarseMolSurface
)
getSecuritymyproxyloginImpl()
(in
SecuritymyproxyloginImplServiceLocator
)
guiCallback()
(in
AddHBondCommandGUICommand
)
Get_procGrid()
(in
ParallelParamsType_Def
)
getSecuritymyproxyloginImplAddress()
(in
SecuritymyproxyloginImplServiceLocator
)
guiCallback()
(in
AddHBondHydrogensGUICommand
)
Get_proteinDielectric()
(in
PhysicsParamsType_Def
)
getSecurityuserimportImpl()
(in
SecurityuserimportImplServiceInterface
)
guiCallback()
(in
BuildHydrogenBondsGUICommand
)
Get_radius()
(in
IonType_Def
)
getSecurityuserimportImpl()
(in
SecurityuserimportImplServiceLocator
)
guiCallback()
(in
DisplayHBonds
)
Get_radius()
(in
AtomType_Def
)
getSecurityuserimportImplAddress()
(in
SecurityuserimportImplServiceLocator
)
guiCallback()
(in
ExtrudeHydrogenBonds
)
Get_residueName()
(in
AtomType_Def
)
getSelection()
(in
MoleculeViewer
)
guiCallback()
(in
LimitHydrogenBonds
)
Get_residueNumber()
(in
AtomType_Def
)
getSelLev()
(in
MoleculeViewer
)
guiCallback()
(in
ReadIntermolHBonds
)
Get_sasaCoeff()
(in
PhysicsParamsType_Def
)
getSequence()
(in
PmvAlignmentEditor
)
guiCallback()
(in
RemoveHBondCommandGUICommand
)
Get_Selection_1
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
getSetsVal()
(in
MVDirectSelectCommand
)
guiCallback()
(in
ShowHBDonorsAcceptors
)
Get_solventDielectric()
(in
PhysicsParamsType_Def
)
getSetsVal()
(in
MVSelectFromStringCommand
)
guiCallback()
(in
ShowHydrogenBonds
)
Get_solventRadius()
(in
PhysicsParamsType_Def
)
getSetsVal()
(in
StringSelectorGUI
)
guiCallback()
(in
WriteAssemblyHBonds
)
Get_status()
(in
BlockingOutputType_Def
)
getSheet2DRes()
(in
ComputeSheet2DCommand
)
guiCallback()
(in
WriteIntermolHBonds
)
Get_status()
(in
JobSubOutputType_Def
)
getSSResidues()
(in
DisplayInteractionsCommand
)
guiCallback()
(in
BugReportCommand
)
Get_stdErr()
(in
APBSOutputType_Def
)
getSurfNames()
(in
DisplayMSMS
)
guiCallback()
(in
mailingListsCommand
)
Get_stdOut()
(in
APBSOutputType_Def
)
getTorsion()
(in
TorsionHistory
)
guiCallback()
(in
MVIcomGUI
)
Get_surfaceCoefficients()
(in
CalculationParamsType_Def
)
getTrajectory()
(in
PlayTrajectoryCommand
)
guiCallback()
(in
LabelByExpression
)
Get_symUnique()
(in
AtomType_Def
)
getTransformedCoords()
(in
AddBondsGUICommand
)
guiCallback()
(in
LabelByProperties
)
Get_systemTemperature()
(in
PhysicsParamsType_Def
)
getTransformedCoords()
(in
Pmv.hbondCommands
)
guiCallback()
(in
MeasureDistanceGUICommand
)
Get_type()
(in
MoleculeOutType_Def
)
getTransformedCoords()
(in
MeasureAtomCommand
)
guiCallback()
(in
MeasureGUICommand
)
Get_url()
(in
MoleculeInType_Def
)
getTransformedCoords()
(in
MVSelectSphericalRegion
)
guiCallback()
(in
AssignBuriedAreas
)
Get_url()
(in
MoleculeOutType_Def
)
getTriangles()
(in
MolIndexedPolygons
)
guiCallback()
(in
ComputeMSMS
)
Get_value()
(in
JobIDType_Def
)
getValue()
(in
GridPointSet
)
guiCallback()
(in
ComputeMSMSApprox
)
Get_viewer_17
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
getVert()
(in
MSMSParser
)
guiCallback()
(in
DisplayBuriedTriangles
)
Get_x()
(in
GridCardinalityType_Def
)
globalFont
(in
Pmv.grid3DCommands
)
guiCallback()
(in
DisplayIntermolecularBuriedTriangles
)
Get_x()
(in
CoordinateType_Def
)
glQuadNormals()
(in
ExtrudeObject
)
guiCallback()
(in
DisplayMSMS
)
Get_y()
(in
GridCardinalityType_Def
)
go()
(in
AugmentedMoleculeChooser
)
guiCallback()
(in
IdentifyBuriedVertices
)
Get_y()
(in
CoordinateType_Def
)
go()
(in
CenterChooser
)
guiCallback()
(in
MsmsNPR
)
Get_z()
(in
GridCardinalityType_Def
)
go()
(in
MoleculeChooser
)
guiCallback()
(in
ReadMSMS
)
Get_z()
(in
CoordinateType_Def
)
go()
(in
BondPicker
)
guiCallback()
(in
SaveMSMS
)
getAngle()
(in
Pmv.hbondCommands
)
goCoarser()
(in
GoCoarserFiner
)
guiCallback()
(in
GoCoarserFiner
)
getAngList()
(in
SetTorsionGUICommand
)
goCoarser()
(in
goCoarserFiner
)
guiCallback()
(in
Multires
)
getAPBSBlockingPortType()
(in
APBSServiceInterface
)
GoCoarserFiner
(in
Pmv.multiresCommands
)
guiCallback()
(in
goCoarserFiner
)
getAPBSBlockingPortType()
(in
APBSServiceLocator
)
goCoarserFiner
(in
Pmv.multiresCommands
)
guiCallback()
(in
MVCommand
)
getAPBSBlockingPortTypeAddress()
(in
APBSServiceLocator
)
GoCoarserFinerGUI
(in
Pmv.multiresCommands
)
guiCallback()
(in
MVSetSelectionLevel
)
getAPBSJobSubPortType()
(in
APBSServiceInterface
)
goCoarserFinerGUI
(in
Pmv.multiresCommands
)
guiCallback()
(in
SetupPdb2Pqr
)
getAPBSJobSubPortType()
(in
APBSServiceLocator
)
goCoarserFinerGuiDescr1
(in
Pmv.multiresCommands
)
guiCallback()
(in
Povray
)
getAPBSJobSubPortTypeAddress()
(in
APBSServiceLocator
)
goCoarserFinerGuiDescr2
(in
Pmv.multiresCommands
)
guiCallback()
(in
AddOXTGUICommand
)
getAPBSStatusPortType()
(in
APBSServiceInterface
)
goFiner()
(in
GoCoarserFiner
)
guiCallback()
(in
CheckForCloseContactsGUICommand
)
getAPBSStatusPortType()
(in
APBSServiceLocator
)
goFiner()
(in
goCoarserFiner
)
guiCallback()
(in
CheckForMissingAtomsGUICommand
)
getAPBSStatusPortTypeAddress()
(in
APBSServiceLocator
)
greater
(in
Pmv.Grid
)
guiCallback()
(in
EditHistHydrogensGUICommand
)
getAtomSetsVal()
(in
MVSelectFromStringCommand
)
greater_equal
(in
Pmv.Grid
)
guiCallback()
(in
ModifyTermini
)
getAtomSetsVal()
(in
StringSelectorGUI
)
greatObj
(in
Pmv.Grid
)
guiCallback()
(in
RepairMissingAtomsGUICommand
)
getAvailableGeoms()
(in
ColorCommand
)
Grid
(in
Pmv
)
guiCallback()
(in
ApplyTransformations
)
getAvailableGeoms()
(in
ColorMolIndexedPolygons
)
Grid
(in
Pmv.Grid
)
guiCallback()
(in
ColorMolIndexedPolygons
)
getAvailableTrace()
(in
ComputeTraceCommand
)
grid3DCommands
(in
Pmv
)
guiCallback()
(in
DisplayMolIndexedPolygons
)
getAvailableTrace()
(in
ExtrudeTraceCommand
)
Grid3DCommands
(in
Pmv.grid3DCommands
)
guiCallback()
(in
ReadBlur
)
getAverage()
(in
Pmv.extruder
)
Grid3DGUI
(in
Pmv.grid3DCommands
)
guiCallback()
(in
ReadDockdata
)
getBoundaries()
(in
SLGeom
)
Grid_ICONPATH
(in
Pmv.grid3DCommands
)
guiCallback()
(in
ReadHarmony
)
getBoundGeomNames()
(in
DisplayBoundGeom
)
gridAll()
(in
GetOrthoSlice
)
guiCallback()
(in
ReadMolIndexedPolygons
)
getChainVal()
(in
MVDirectSelectCommand
)
GridCardinalityType_Def
(in
nbcr_sdsc_edu_apbs_types
)
guiCallback()
(in
ReadTransformations
)
getChainVal()
(in
MVSelectFromStringCommand
)
gridCommands
(in
Pmv
)
guiCallback()
(in
ComputeSecondaryStructureCommand
)
getChainVal()
(in
StringSelectorGUI
)
GridMultiListbox
(in
Pmv.grid3DCommands
)
guiCallback()
(in
ExtrudeSecondaryStructureCommand
)
getChildrenGeomsName()
(in
ColorCommand
)
GridParamsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
guiCallback()
(in
RibbonCommand
)
getColor()
(in
AutoGridSurfaceGui
)
gridParamUpdate()
(in
APBSSetup
)
guiCallback()
(in
MVClearSelection
)
getColors()
(in
ColorByChain
)
GridPointSet
(in
Pmv.Grid
)
guiCallback()
(in
MVDirectSelectCommand
)
getColors()
(in
ColorByMolecule
)
GridReader
(in
Pmv.gridCommands
)
guiCallback()
(in
MVInvertSelection
)
getColors()
(in
ColorByResidueType
)
GridReaderGUI
(in
Pmv.gridCommands
)
guiCallback()
(in
MVSaveSetCommand
)
getColors()
(in
ColorFromPalette
)
gridReaderGuiDescr
(in
Pmv.gridCommands
)
guiCallback()
(in
MVSelectFromStringCommand
)
getColors()
(in
ColorShapely
)
GridType_Def
(in
nbcr_sdsc_edu_apbs_types
)
guiCallback()
(in
MVSelectSetCommand
)
getColors()
(in
ColorBySSElementType
)
gridWidgets()
(in
GetOrthoSlice
)
guiCallback()
(in
MVSelectSphericalRegion
)
getCoords()
(in
APBSSetup
)
GROReader
(in
Pmv.fileCommands
)
guiCallback()
(in
SetTorsionGUICommand
)
getCurrentAngle()
(in
TorsionAngle
)
guiApply_cb()
(in
EditColorPaletteByAtomType
)
guiCallback()
(in
ComputeSplineGUICommand
)
getEnergy()
(in
GetHydrogenBondEnergies
)
guiCallback()
(in
APBSDisplayOrthoSlice
)
guiCallback()
(in
CustomSplineCommand
)
getExtrudeProperties()
(in
ExtrudeSSElt
)
guiCallback()
(in
APBSDisplay_Isocontours
)
guiCallback()
(in
DisplaySplineAsLineCommand
)
getExtrudeResidues()
(in
ExtrudeSSElt
)
guiCallback()
(in
APBSLoad_Profile
)
guiCallback()
(in
ExtrudeSplineCommand
)
getextrudeVertices()
(in
ExtrudeObject
)
guiCallback()
(in
APBSMap_Potential_to_MSMS
)
guiCallback()
(in
SuperImposeAtomsGUICommand
)
getFaces()
(in
ExtrudeObject
)
guiCallback()
(in
APBSPreferences
)
guiCallback()
(in
SuperimposeAtomsGUICommand
)
getFaces()
(in
MSMSParser
)
guiCallback()
(in
APBSRun
)
guiCallback()
(in
ComputeTraceCommand
)
getFile()
(in
PlayMolecularDynamicsTrjAmber94
)
guiCallback()
(in
APBSSave_Profile
)
guiCallback()
(in
CustomTraceCommand
)
getFile()
(in
SetupAmber94
)
guiCallback()
(in
APBSSetup
)
guiCallback()
(in
DisplayTraceCommand
)
getFormValues()
(in
DisplayCommand
)
guiCallback()
(in
APBSVolumeRender
)
guiCallback()
(in
ExtrudeTraceCommand
)
getFreeMemoryInformation()
(in
DeleteAllMolecules
)
guiCallback()
(in
APBSWrite_APBS_Parameter_File
)
guiCallback()
(in
OpenTrajectoryCommand
)
getFreeMemoryInformation()
(in
DeleteMolecule
)
guiCallback()
(in
RestoreBsptCommand
)
guiCallback()
(in
PlayTrajectoryCommand
)
getGeomColor()
(in
MolGeomContainer
)
guiCallback()
(in
SLCommand
)
guiCallback()
(in
Update
)
getGeomOpacity()
(in
MolGeomContainer
)
guiCallback()
(in
SaveBsptCommand
)
guiCallback()
(in
loadVUFile
)
GetHydrogenBondAcceptors
(in
Pmv.hbondCommands
)
guiCallback()
(in
About
)
guiCallback()
(in
loadVect
)
GetHydrogenBondDonors
(in
Pmv.hbondCommands
)
guiCallback()
(in
ConstrainAtomsAmber94
)
guiCallback()
(in
VideoCommand
)
GetHydrogenBondEnergies
(in
Pmv.hbondCommands
)
guiCallback()
(in
FixAmberHAtomNamesGUICommand
)
guiCallback()
(in
ExportSets
)
getICOMBar()
(in
Pmv.interactiveCommands
)
guiCallback()
(in
FreezeAtomsAmber94
)
guiCallback()
(in
VisionCommand
)
getICOMNames()
(in
MVIcomGUI
)
guiCallback()
(in
MinimizeAmber94
)
guiCallback()
(in
WriteColoredM
)
getIcon()
(in
MolFragNodeWithButtons
)
guiCallback()
(in
MolecularDynamicsAmber94
)
guiCallback()
(in
WriteSTL
)
getIfd()
(in
DisplayHBonds
)
guiCallback()
(in
PlayMolecularDynamicsTrjAmber94
)
guiTools
(in
Pmv
)
H
handleAddEvents()
(in
ControlPanel
)
hide()
(in
CPCommandEditor
)
hideDTypes()
(in
BuildHydrogenBondsGUICommand
)
handleAddEvents()
(in
Dashboard
)
hide()
(in
ControlPanel
)
hideDTypes()
(in
ShowHBDonorsAcceptors
)
handleControlKey()
(in
TreeViewWithCheckbuttons
)
hide()
(in
Dashboard
)
hidePalette_cb()
(in
DisplayHBonds
)
handleDeleteEvents()
(in
ControlPanel
)
hide()
(in
readFromWebCommand
)
hidePalette_cb()
(in
ExtrudeHydrogenBonds
)
handleDeleteEvents()
(in
Dashboard
)
hide()
(in
Grid3DCommands
)
hideSelector()
(in
AddHBondHydrogensGUICommand
)
handleDisplayValue()
(in
DisplayCommand
)
hide()
(in
VisionCommand
)
hideSelector()
(in
BuildHydrogenBondsGUICommand
)
handleEditEvent()
(in
DisplayMSMS
)
hide_cb()
(in
DeleteMolecule
)
hideSelector()
(in
LimitHydrogenBonds
)
handleNegateOnly()
(in
DisplayCommand
)
hide_widget_group()
(in
DefinePdbSpecifications
)
hideShow()
(in
myTF
)
hbondCommands
(in
Pmv
)
hide_xyz()
(in
MVSelectSphericalRegion
)
hideShowIso()
(in
IGraph
)
HD1()
(in
EditHistHydrogens
)
hideASelector()
(in
BuildHydrogenBondsGUICommand
)
hideTypeCBs()
(in
BuildHydrogenBondsGUICommand
)
HD1HE2()
(in
EditHistHydrogens
)
hideASelector()
(in
ShowHBDonorsAcceptors
)
highLight()
(in
EditHistHydrogensGUICommand
)
HE2()
(in
EditHistHydrogens
)
hideATypes()
(in
BuildHydrogenBondsGUICommand
)
HLCommand()
(in
SetTorsionGUICommand
)
height
(in
readFromWebCommand
)
hideATypes()
(in
ShowHBDonorsAcceptors
)
hueColor()
(in
ColorMapGUI
)
height
(in
Pmv.grid3DCommands
)
hideDefaults()
(in
BuildHydrogenBondsGUICommand
)
hypot
(in
Pmv.Grid
)
helpCommands
(in
Pmv
)
hideDSelector()
(in
ShowHBDonorsAcceptors
)
hypotenuse()
(in
SetQuaternion
)
I
ICONPATH
(in
Pmv.moleculeViewer
)
initModule()
(in
Pmv.aboutCommands
)
initModule()
(in
Pmv.updateCommands
)
IdentifyBuriedVertices
(in
Pmv.msmsCommands
)
initModule()
(in
Pmv.amberCommands
)
initModule()
(in
Pmv.vectfieldCommands
)
IdentifyBuriedVerticesGUI
(in
Pmv.msmsCommands
)
initModule()
(in
Pmv.bondsCommands
)
initModule()
(in
Pmv.visionCommands
)
identifyBuriedVerticesGuiDescr
(in
Pmv.msmsCommands
)
initModule()
(in
Pmv.coarseMolSurfaceCommands
)
initModule()
(in
Pmv.writeMsmsAsCommands
)
IGraph
(in
Pmv.grid3DCommands
)
initModule()
(in
Pmv.colorCommands
)
inList()
(in
TorsionAngle
)
importMolKitLib()
(in
Pmv.VisionInterface.PmvNodes
)
initModule()
(in
Pmv.colorPaletteCommands
)
input_Ports_5
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
importSymLib()
(in
Pmv.VisionInterface.PmvNodes
)
initModule()
(in
Pmv.controlPanelCommands
)
insert()
(in
MoleculeListChooser
)
importVizLib()
(in
Pmv.VisionInterface.PmvNodes
)
initModule()
(in
Pmv.dashboardCommands
)
INT
(in
ColorPalette
)
importVolLib()
(in
Pmv.VisionInterface.PmvNodes
)
initModule()
(in
Pmv.deleteCommands
)
int
increaseCts()
(in
MVSelectFromStringCommand
)
initModule()
(in
Pmv.displayCommands
)
Int0
(in
Pmv.Grid
)
increaseCts()
(in
StringSelectorGUI
)
initModule()
(in
Pmv.editCommands
)
Int16
(in
Pmv.Grid
)
ind_selectfield_cb()
(in
DefinePdbSpecifications
)
initModule()
(in
Pmv.extrusionCommands
)
Int32
(in
Pmv.Grid
)
index2coordinate()
(in
AutoGrid
)
initModule()
(in
Pmv.fileCommands
)
Int8
(in
Pmv.Grid
)
index2coordinate()
(in
GridPointSet
)
initModule()
(in
Pmv.genparserCommands
)
interactiveCommands
(in
Pmv
)
index_cb()
(in
DefinePdbSpecifications
)
initModule()
(in
Pmv.grid3DCommands
)
interactiveExit_cb()
(in
VisionCommand
)
indexedFromArr()
(in
SLGeom
)
initModule()
(in
Pmv.gridCommands
)
interpolate()
(in
DisplayHBonds
)
indexedFromArr_old()
(in
SLGeom
)
initModule()
(in
Pmv.hbondCommands
)
interpolate()
(in
ExtrudeHydrogenBonds
)
indexedFromFile0()
(in
SLGeom
)
initModule()
(in
Pmv.helpCommands
)
interpolateSmoothArray()
(in
Sheet2D
)
IndexedPolygons_4
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
initModule()
(in
Pmv.interactiveCommands
)
interpPoints()
(in
Pmv.Ribbon
)
indexLabel()
(in
DefinePdbSpecifications
)
initModule()
(in
Pmv.labelCommands
)
intersect()
(in
MVSelectFromStringCommand
)
initCallback()
(in
TreeViewWithCheckbuttons
)
initModule()
(in
Pmv.measureCommands
)
intervals_list
(in
LUT_data
)
InitCoarserFiner()
(in
goCoarserFiner
)
initModule()
(in
Pmv.msmsCommands
)
invert
(in
Pmv.Grid
)
initColorVars()
(in
AutoGridSurfaceGui
)
initModule()
(in
Pmv.multiresCommands
)
invert()
(in
MVSelectFromStringCommand
)
initCommand
(in
Pmv.SLCommands
)
initModule()
(in
Pmv.pdb2pqrCommands
)
IonType_Def
(in
nbcr_sdsc_edu_apbs_types
)
initFunc()
(in
APBSMap_Potential_to_MSMS
)
initModule()
(in
Pmv.povrayCommands
)
iscontiguous()
(in
Grid
)
initGeom()
(in
DisplayHBonds
)
initModule()
(in
Pmv.repairCommands
)
isocontour
(in
Pmv.grid3DCommands
)
initGeom()
(in
DisplayHBondsAsCylinders
)
initModule()
(in
Pmv.sdCommands
)
Isocontour()
(in
Grid3DCommands
)
initGeom()
(in
DisplayHBondsAsSpheres
)
initModule()
(in
Pmv.secondaryStructureCommands
)
IsocontourCommand
(in
Pmv.grid3DCommands
)
initICOM()
(in
MeasureGUICommand
)
initModule()
(in
Pmv.selectionCommands
)
isOn()
(in
MVSelectColumnDescriptor
)
initICOM()
(in
SuperImposeAtomsGUICommand
)
initModule()
(in
Pmv.setangleCommands
)
isOn()
(in
MVvisibilityColumnDescriptor
)
initICOM()
(in
SuperimposeAtomsGUICommand
)
initModule()
(in
Pmv.splineCommands
)
isoValueGUI()
(in
IGraph
)
initIsoContour()
(in
Grid
)
initModule()
(in
Pmv.superImposeCommands
)
isrecordable
(in
Pmv.videoCommands
)
initMap()
(in
AutoGridSurfaceGui
)
initModule()
(in
Pmv.superimposeCommandsNew
)
itemsize()
(in
Grid
)
initModule()
(in
Pmv.APBSCommands
)
initModule()
(in
Pmv.traceCommands
)
initModule()
(in
Pmv.SLCommands
)
initModule()
(in
Pmv.trajectoryCommands
)
J
JobIDType_Def
(in
nbcr_sdsc_edu_apbs_types
)
JobSubOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
K
key_cb()
(in
KeySelectable
)
keyUp_cb()
(in
KeySelectable
)
kill
(in
Pmv.guiTools
)
KeySelectable
(in
Pmv.controlPanelCommands
)
Kill
(in
Pmv.guiTools
)
kill()
(in
Kill
)
L
LabelByExpression
(in
Pmv.labelCommands
)
listmols
(in
readFromWebCommand
)
loadCM_cb()
(in
ColorByExpression
)
LabelByExpressionGUI
(in
Pmv.labelCommands
)
listUsers()
(in
SecurityUserImportServiceSoapBindingSOAP
)
loadCM_cb()
(in
ColorByProperties
)
labelByName()
(in
SuperImposeAtomsGUICommand
)
listUsersRequest
(in
Pmv.SecurityuserimportImplService_services
)
loadFile()
(in
loadVUFile
)
labelByName()
(in
SuperimposeAtomsGUICommand
)
listUsersRequestWrapper
(in
Pmv.SecurityuserimportImplService_services
)
loadMoleculeIfNeeded()
(in
MoleculeViewer
)
LabelByProperties
(in
Pmv.labelCommands
)
listUsersResponse
(in
Pmv.SecurityuserimportImplService_services
)
loadNetwork()
(in
coarseMolSurface
)
LabelByPropertiesGUI
(in
Pmv.labelCommands
)
listUsersResponseWrapper
(in
Pmv.SecurityuserimportImplService_services
)
loadProfile()
(in
APBSSetup
)
labelColDescr
(in
Pmv.dashboard
)
literal
(in
apbsFaultOutput_Dec
)
loadSpecs_cb()
(in
DefinePdbSpecifications
)
LabelColumnDescriptor
(in
Pmv.dashboard
)
literal
(in
calculateBindingEnergyBlockingInput_Dec
)
loadVect
(in
Pmv.vectfieldCommands
)
labelCommands
(in
Pmv
)
literal
(in
calculateBindingEnergyBlockingOutput_Dec
)
loadVectGUI
(in
Pmv.vectfieldCommands
)
labelsSettings_cb()
(in
LabelByProperties
)
literal
(in
calculateBindingEnergyInput_Dec
)
loadVUFile
(in
Pmv.vectfieldCommands
)
lastDir
(in
GROReader
)
literal
(in
calculateBindingEnergyOutput_Dec
)
loadVUFileGUI
(in
Pmv.vectfieldCommands
)
lastDir
(in
MMCIFReader
)
literal
(in
calculateElectrostaticPotentialBlockingInput_Dec
)
log
(in
Pmv.Grid
)
lastDir
(in
MoleculeReader
)
literal
(in
calculateElectrostaticPotentialBlockingOutput_Dec
)
log10
(in
Pmv.Grid
)
lastDir
(in
PDBReader
)
literal
(in
calculateElectrostaticPotentialInput_Dec
)
logical_and
(in
Pmv.Grid
)
Left_Isocontour_7
(in
Pmv.VisionInterface.APBSIsoContour_net
)
literal
(in
calculateElectrostaticPotentialOutput_Dec
)
logical_not
(in
Pmv.Grid
)
left_shift
(in
Pmv.Grid
)
literal
(in
calculateSolvationEnergyBlockingInput_Dec
)
logical_or
(in
Pmv.Grid
)
Left_Visible()
(in
APBSDisplay_Isocontours
)
literal
(in
calculateSolvationEnergyBlockingOutput_Dec
)
logical_xor
(in
Pmv.Grid
)
less
(in
Pmv.Grid
)
literal
(in
calculateSolvationEnergyInput_Dec
)
loginUserMyProxy()
(in
SecurityMyproxyloginServiceSoapBindingSOAP
)
less_equal
(in
Pmv.Grid
)
literal
(in
calculateSolvationEnergyOutput_Dec
)
loginUserMyProxyRequest
(in
Pmv.SecuritymyproxyloginImplService_services
)
lessObj
(in
Pmv.Grid
)
literal
(in
destroyInput_Dec
)
loginUserMyProxyRequestWrapper
(in
Pmv.SecuritymyproxyloginImplService_services
)
level_cb()
(in
MVSetInteractiveCmd
)
literal
(in
getOutputsInput_Dec
)
loginUserMyProxyResponse
(in
Pmv.SecuritymyproxyloginImplService_services
)
levelOrder
(in
ColorByProperties
)
literal
(in
getOutputsOutput_Dec
)
loginUserMyProxyResponseWrapper
(in
Pmv.SecuritymyproxyloginImplService_services
)
levelOrder
(in
DisplayCPKByProperty
)
literal
(in
queryStatusInput_Dec
)
lookup()
(in
ColorPalette
)
LimitHydrogenBonds
(in
Pmv.hbondCommands
)
literal
(in
queryStatusOutput_Dec
)
lookup()
(in
ColorPaletteFunction
)
LimitHydrogenBondsGUI
(in
Pmv.hbondCommands
)
load_file()
(in
myTF
)
lookupFunc()
(in
ColorByDG
)
LimitHydrogenBondsGuiDescr
(in
Pmv.hbondCommands
)
loadAllColunms()
(in
Pmv.dashboard
)
LUT_data
(in
Pmv.grid3DCommands
)
M
mailCmds_cb()
(in
mailingListsCommand
)
minimum
(in
Pmv.Grid
)
MsmsPicker
(in
Pmv.picker
)
mailingListsCommand
(in
Pmv.helpCommands
)
mkUnitQuat()
(in
SetQuaternion
)
multiply
(in
Pmv.Grid
)
mailingListsCommandGUI
(in
Pmv.helpCommands
)
MMCIFReader
(in
Pmv.fileCommands
)
Multires
(in
Pmv.multiresCommands
)
make_purine()
(in
Pmv.NucleicBases
)
mobmovedown_cb()
(in
SuperimposeAtomsGUICommand
)
multiresCommands
(in
Pmv
)
make_pyrimidine()
(in
Pmv.NucleicBases
)
mobmoveup_cb()
(in
SuperimposeAtomsGUICommand
)
MultiresGUI
(in
Pmv.multiresCommands
)
make_selected()
(in
myTF
)
mobremove_cb()
(in
SuperimposeAtomsGUICommand
)
multiresGuiDescr
(in
Pmv.multiresCommands
)
makeIfdEntry()
(in
AutoGridSliceGui
)
mode_cb()
(in
coarseMolSurface
)
mv
(in
Pmv.moleculeViewer
)
makeIfdEntry()
(in
AutoGridSurfaceGui
)
ModifyCTerminus
(in
Pmv.repairCommands
)
MVAddSelectCommand
(in
Pmv.selectionCommands
)
manageChildren()
(in
TreeViewWithCheckbuttons
)
ModifyNTerminus
(in
Pmv.repairCommands
)
MVAtomICOM
(in
Pmv.mvCommand
)
Map_Pot_On_Geom_4
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
ModifyTermini
(in
Pmv.repairCommands
)
MVBindCmdToKey
(in
Pmv.interactiveCommands
)
mapLabel
(in
ColorByExpression
)
ModifyTerminiCommandGUI
(in
Pmv.repairCommands
)
MVBondICOM
(in
Pmv.mvCommand
)
mapLabel
(in
LabelByExpression
)
modlib
(in
Pmv
)
MVCenterOnNodes
(in
Pmv.mvCommand
)
mapText
(in
ColorByExpression
)
modlist
(in
Pmv.modlib
)
MVClearSelection
(in
Pmv.selectionCommands
)
mapText
(in
LabelByExpression
)
mol
(in
Pmv.Ribbon
)
MVClearSelectionGUI
(in
Pmv.selectionCommands
)
masterbuttonKeywords
(in
StringSelectorGUI
)
MOL2Reader
(in
Pmv.fileCommands
)
MVColumnDescriptor
(in
Pmv.dashboard
)
match()
(in
KeySelectable
)
mol2ReaderGuiDescr
(in
Pmv.fileCommands
)
mvCommand
(in
Pmv
)
max_cb()
(in
ColorMapGUI
)
MolecularDynamicsAmber94
(in
Pmv.amberCommands
)
MVCommand
(in
Pmv.mvCommand
)
maximum
(in
Pmv.Grid
)
MolecularDynamicsAmber94CommandGUI
(in
Pmv.amberCommands
)
MVCommandGUI
(in
Pmv.mvCommand
)
MeasureAngle
(in
Pmv.measureCommands
)
molecule1Select()
(in
APBSSetup
)
MVCreateSetIfNeeded
(in
Pmv.selectionCommands
)
measureAngle()
(in
TorsionAngle
)
molecule2Select()
(in
APBSSetup
)
MVDeSelectCommand
(in
Pmv.selectionCommands
)
MeasureAngleGUICommand
(in
Pmv.measureCommands
)
MoleculeChooser
(in
Pmv.guiTools
)
MVDirectSelectCommand
(in
Pmv.selectionCommands
)
MeasureAngleGUICommandGUI
(in
Pmv.measureCommands
)
MoleculeFormatType_Def
(in
nbcr_sdsc_edu_apbs_types
)
MVDirectSelectCommandGUI
(in
Pmv.selectionCommands
)
MeasureAtomCommand
(in
Pmv.measureCommands
)
MoleculeInType_Def
(in
nbcr_sdsc_edu_apbs_types
)
mvDirectSelectCommandGuiDescr
(in
Pmv.selectionCommands
)
measureCommands
(in
Pmv
)
MoleculeListChooser
(in
Pmv.guiTools
)
MVDisplayColumnDescriptor
(in
Pmv.dashboard
)
MeasureDistance
(in
Pmv.measureCommands
)
moleculeListSelect()
(in
APBSSetup
)
MVICOM
(in
Pmv.mvCommand
)
MeasureDistanceCtrlGUICommand
(in
Pmv.measureCommands
)
MoleculeLoader
(in
Pmv.fileCommands
)
MVIcomGUI
(in
Pmv.interactiveCommands
)
MeasureDistanceGUICommand
(in
Pmv.measureCommands
)
MoleculeOutType_Def
(in
nbcr_sdsc_edu_apbs_types
)
MVInteractiveCmdCaller
(in
Pmv.mvCommand
)
MeasureDistanceGUICommandGUI
(in
Pmv.measureCommands
)
MoleculeReader
(in
Pmv.fileCommands
)
MVInvertSelection
(in
Pmv.selectionCommands
)
MeasureGUICommand
(in
Pmv.measureCommands
)
MoleculeReaderGUI
(in
Pmv.fileCommands
)
MVInvertSelectionGUI
(in
Pmv.selectionCommands
)
MeasureTorsion
(in
Pmv.measureCommands
)
MoleculeType_Def
(in
nbcr_sdsc_edu_molecule_types
)
mvInvertSelectionGuiDescr
(in
Pmv.selectionCommands
)
MeasureTorsionGUICommand
(in
Pmv.measureCommands
)
moleculeViewer
(in
Pmv
)
MVPrintNodeNames
(in
Pmv.mvCommand
)
MeasureTorsionGUICommandGUI
(in
Pmv.measureCommands
)
MoleculeViewer
(in
Pmv.moleculeViewer
)
MVSaveSetCommand
(in
Pmv.selectionCommands
)
memoryToBeAllocated()
(in
APBSSetup
)
MolFragNodeWithButtons
(in
Pmv.dashboard
)
MVSaveSetCommandGUI
(in
Pmv.selectionCommands
)
menuKeywords
(in
StringSelectorGUI
)
MolFragTreeWithButtons
(in
Pmv.dashboard
)
mvSaveSetCommandGuiDescr
(in
Pmv.selectionCommands
)
merge_function()
(in
myTF
)
MolGeomContainer
(in
Pmv.moleculeViewer
)
MVSelectColumnDescriptor
(in
Pmv.dashboard
)
MergeFieldsCommand
(in
Pmv.editCommands
)
MolIndexedPolygons
(in
Pmv.sdCommands
)
MVSelectCommand
(in
Pmv.selectionCommands
)
MergeFieldsCommandGUI
(in
Pmv.editCommands
)
mouseDown()
(in
ColorMapGUI
)
MVSelectFromStringCommand
(in
Pmv.selectionCommands
)
mergeFieldsCommandGuiDescr
(in
Pmv.editCommands
)
mouseMotion()
(in
ColorMapGUI
)
MVSelectFromStringCommandGUI
(in
Pmv.selectionCommands
)
MergeLonePairsCommand
(in
Pmv.editCommands
)
mouseUp()
(in
ColorMapGUI
)
mvSelectFromStringCommandGuiDescr
(in
Pmv.selectionCommands
)
mergeLonePairsCommandGuiDescr
(in
Pmv.editCommands
)
mouseUp()
(in
AutoGridIsoSurface
)
MVSelectSetCommand
(in
Pmv.selectionCommands
)
MergeLonePairsGUICommand
(in
Pmv.editCommands
)
mouseUp()
(in
SetTorsionGUICommand
)
MVSelectSetCommandGUI
(in
Pmv.selectionCommands
)
MergeLonePairsGUICommandGUI
(in
Pmv.editCommands
)
moveBar()
(in
IGraph
)
mvSelectSetCommandGuiDescr
(in
Pmv.selectionCommands
)
MergeNPHsCommand
(in
Pmv.editCommands
)
moveSlice()
(in
AutoGridSliceGui
)
MVSelectSphericalRegion
(in
Pmv.selectionCommands
)
MergeNPHsGUICommand
(in
Pmv.editCommands
)
moveTreeToWidget()
(in
Pmv.dashboard
)
MVSelectSphericalRegionGUI
(in
Pmv.selectionCommands
)
MergeNPHsGUICommandGUI
(in
Pmv.editCommands
)
msg
(in
Pmv.grid3DCommands
)
mvSelectSphericalRegionGuiDescr
(in
Pmv.selectionCommands
)
mergeNPHsGUICommandGuiDescr
(in
Pmv.editCommands
)
msg
(in
Pmv.visionCommands
)
MVSetIcomLevel
(in
Pmv.mvCommand
)
MergeSetsCommand
(in
Pmv.editCommands
)
MSMSColumnDescriptor
(in
Pmv.dashboard
)
MVSetInteractiveCmd
(in
Pmv.interactiveCommands
)
MergeSetsCommandGUI
(in
Pmv.editCommands
)
msmsCommands
(in
Pmv
)
MVSetSelectionLevel
(in
Pmv.mvCommand
)
mergeSetsCommandGuiDescr
(in
Pmv.editCommands
)
msmsFound
(in
Pmv.VisionInterface.PmvNodes
)
MVSetSelectionLevelGUI
(in
Pmv.mvCommand
)
meshArea()
(in
Pmv.computeIsovalue
)
MsmsNPR
(in
Pmv.msmsCommands
)
MVvisibilityColumnDescriptor
(in
Pmv.dashboard
)
message_box()
(in
readFromWebCommand
)
MsmsNPRGUI
(in
Pmv.msmsCommands
)
MVXorSelectCommand
(in
Pmv.selectionCommands
)
min_cb()
(in
ColorMapGUI
)
msmsNPRGuiDescr
(in
Pmv.msmsCommands
)
myLUT
(in
Pmv.grid3DCommands
)
MinimizeAmber94
(in
Pmv.amberCommands
)
msmsParser
(in
Pmv
)
myTF
(in
Pmv.grid3DCommands
)
MinimizeAmber94CommandGUI
(in
Pmv.amberCommands
)
MSMSParser
(in
Pmv.msmsParser
)
N
n
(in
Pmv.Ribbon
)
nextFrame()
(in
TrajPlayerCached
)
notequalObj
(in
Pmv.Grid
)
n
(in
Pmv.hbondCommands
)
nextImage()
(in
About
)
notgreatObj
(in
Pmv.Grid
)
natoms
(in
Pmv.Ribbon
)
nodes()
(in
Pmv
)
notlessObj
(in
Pmv.Grid
)
nbcr_sdsc_edu_apbs_types
(in
Pmv.APBSService_services_types
)
NodeWithCheckbuttons
(in
Pmv.controlPanelCommands
)
nres
(in
Pmv.Ribbon
)
nbcr_sdsc_edu_molecule_types
(in
Pmv.APBSService_services_types
)
NoMod_cb()
(in
MVIcomGUI
)
nrib
(in
Pmv.Ribbon
)
nchords
(in
Pmv.Ribbon
)
NONCRITICAL_DEPENDENCIES
(in
Pmv
)
Nucleic_Acids_properties
(in
Pmv.extrusionCommands
)
negative
(in
Pmv.Grid
)
normal()
(in
MeasureAngleGUICommand
)
NucleicBases
(in
Pmv
)
net()
(in
Pmv
)
normalCorrection()
(in
Pmv.computeIsovalue
)
Numeric
new_Tors()
(in
SetTorsionGUICommand
)
normalize()
(in
Pmv.Ribbon
)
NewMsmsPicker
(in
Pmv.picker
)
not_equal
(in
Pmv.Grid
)
O
offset
(in
Pmv.Ribbon
)
onAddCmdToViewer()
(in
BuildHydrogenBonds
)
onAddObjectToViewer()
(in
DisplayCPKByProperty
)
Offset_9
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
onAddCmdToViewer()
(in
BuildHydrogenBondsGUICommand
)
onAddObjectToViewer()
(in
DisplayLines
)
ok()
(in
readFromWebCommand
)
onAddCmdToViewer()
(in
DisplayHBonds
)
onAddObjectToViewer()
(in
DisplaySSSB
)
Ok_cb()
(in
LimitHydrogenBonds
)
onAddCmdToViewer()
(in
ExtrudeHydrogenBonds
)
onAddObjectToViewer()
(in
DisplaySticksAndBalls
)
OK_cb()
(in
AssignBuriedAreas
)
onAddCmdToViewer()
(in
GetHydrogenBondAcceptors
)
onAddObjectToViewer()
(in
ShowMolecules
)
OK_cb()
(in
DisplayBuriedTriangles
)
onAddCmdToViewer()
(in
GetHydrogenBondDonors
)
onAddObjectToViewer()
(in
AssignAtomsRadiiCommand
)
OK_cb()
(in
DisplayIntermolecularBuriedTriangles
)
onAddCmdToViewer()
(in
GetHydrogenBondEnergies
)
onAddObjectToViewer()
(in
DisplayPath3DCommand
)
OK_cb()
(in
IdentifyBuriedVertices
)
onAddCmdToViewer()
(in
LimitHydrogenBonds
)
onAddObjectToViewer()
(in
LabelByProperties
)
ok_cb()
(in
CheckForCloseContactsGUICommand
)
onAddCmdToViewer()
(in
RemoveHBondCommandGUICommand
)
onAddObjectToViewer()
(in
ComputeMSMS
)
onAddCmdToViewer()
(in
APBSDisplayOrthoSlice
)
onAddCmdToViewer()
(in
ShowHBDonorsAcceptors
)
onAddObjectToViewer()
(in
ReadMSMS
)
onAddCmdToViewer()
(in
APBSDisplay_Isocontours
)
onAddCmdToViewer()
(in
ShowHydrogenBonds
)
onAddObjectToViewer()
(in
ReadMolIndexedPolygons
)
onAddCmdToViewer()
(in
APBSMap_Potential_to_MSMS
)
onAddCmdToViewer()
(in
WriteAssemblyHBonds
)
onAddObjectToViewer()
(in
ExtrudeSecondaryStructureCommand
)
onAddCmdToViewer()
(in
APBSRun
)
onAddCmdToViewer()
(in
MVBindCmdToKey
)
onAddObjectToViewer()
(in
MVSelectSphericalRegion
)
onAddCmdToViewer()
(in
APBSSave_Profile
)
onAddCmdToViewer()
(in
MVIcomGUI
)
onAddObjectToViewer()
(in
PlayTrajectoryCommand
)
onAddCmdToViewer()
(in
APBSSetup
)
onAddCmdToViewer()
(in
LabelByProperties
)
onAddObjectToViewer()
(in
loadVect
)
onAddCmdToViewer()
(in
APBSVolumeRender
)
onAddCmdToViewer()
(in
MeasureAngleGUICommand
)
onChangeMolecule()
(in
ApplyTransformations
)
onAddCmdToViewer()
(in
ConstrainAtomsAmber94
)
onAddCmdToViewer()
(in
MeasureDistanceCtrlGUICommand
)
onChangeQdir()
(in
ApplyTransformations
)
onAddCmdToViewer()
(in
FixAmberHAtomNamesGUICommand
)
onAddCmdToViewer()
(in
MeasureDistanceGUICommand
)
onChangeQlist()
(in
ApplyTransformations
)
onAddCmdToViewer()
(in
FixAmberResNamesAndOrderAtomsCommand
)
onAddCmdToViewer()
(in
MeasureTorsionGUICommand
)
onChangeRange()
(in
ApplyTransformations
)
onAddCmdToViewer()
(in
MinimizeAmber94
)
onAddCmdToViewer()
(in
ComputeMSMS
)
onCmdRun()
(in
ControlPanel
)
onAddCmdToViewer()
(in
AddBondsCommand
)
onAddCmdToViewer()
(in
DisplayMSMS
)
onCmdRun()
(in
Dashboard
)
onAddCmdToViewer()
(in
AddBondsGUICommand
)
onAddCmdToViewer()
(in
SaveMSMS
)
onExitFromViewer()
(in
VisionCommand
)
onAddCmdToViewer()
(in
BuildBondsByDistance
)
onAddCmdToViewer()
(in
UndisplayMSMS
)
onIncrement()
(in
ApplyTransformations
)
onAddCmdToViewer()
(in
RemoveBondsCommand
)
onAddCmdToViewer()
(in
MVSetSelectionLevel
)
onMouseOver()
(in
IGraph
)
onAddCmdToViewer()
(in
RemoveBondsGUICommand
)
onAddCmdToViewer()
(in
SetupPdb2Pqr
)
onMouseOver()
(in
myTF
)
onAddCmdToViewer()
(in
coarseMolSurface
)
onAddCmdToViewer()
(in
Povray
)
onPick()
(in
MoleculeChooser
)
onAddCmdToViewer()
(in
ColorByExpression
)
onAddCmdToViewer()
(in
AddOXT
)
onPmvCmd()
(in
MSMSColumnDescriptor
)
onAddCmdToViewer()
(in
ColorByProperties
)
onAddCmdToViewer()
(in
AddOXTGUICommand
)
onPmvCmd()
(in
MVColumnDescriptor
)
onAddCmdToViewer()
(in
ColorCommand
)
onAddCmdToViewer()
(in
CheckForCloseContacts
)
onPmvCmd()
(in
MVDisplayColumnDescriptor
)
onAddCmdToViewer()
(in
ColorFromPalette
)
onAddCmdToViewer()
(in
CheckForCloseContactsGUICommand
)
onPmvCmd()
(in
MVSelectColumnDescriptor
)
onAddCmdToViewer()
(in
EditColorPaletteByAtomType
)
onAddCmdToViewer()
(in
CheckForMissingAtoms
)
onPmvCmd()
(in
MVvisibilityColumnDescriptor
)
onAddCmdToViewer()
(in
ControlPanel
)
onAddCmdToViewer()
(in
CheckForMissingAtomsGUICommand
)
onRemoveObjectFromViewer()
(in
APBSDisplayOrthoSlice
)
onAddCmdToViewer()
(in
AddDashboardCmd
)
onAddCmdToViewer()
(in
EditHistHydrogens
)
onRemoveObjectFromViewer()
(in
APBSDisplay_Isocontours
)
onAddCmdToViewer()
(in
Dashboard
)
onAddCmdToViewer()
(in
ModifyCTerminus
)
onRemoveObjectFromViewer()
(in
APBSMap_Potential_to_MSMS
)
onAddCmdToViewer()
(in
DashboardSuspendRedraw
)
onAddCmdToViewer()
(in
ModifyNTerminus
)
onRemoveObjectFromViewer()
(in
APBSRun
)
onAddCmdToViewer()
(in
DockDashboard
)
onAddCmdToViewer()
(in
ModifyTermini
)
onRemoveObjectFromViewer()
(in
APBSSave_Profile
)
onAddCmdToViewer()
(in
FloatDashboard
)
onAddCmdToViewer()
(in
RepairMissingAtoms
)
onRemoveObjectFromViewer()
(in
APBSSetup
)
onAddCmdToViewer()
(in
ShowDashboard
)
onAddCmdToViewer()
(in
RepairMissingAtomsGUICommand
)
onRemoveObjectFromViewer()
(in
APBSVolumeRender
)
onAddCmdToViewer()
(in
DeleteAllMolecules
)
onAddCmdToViewer()
(in
ApplyTransformations
)
onRemoveObjectFromViewer()
(in
AddBondsGUICommand
)
onAddCmdToViewer()
(in
DeleteAtomSet
)
onAddCmdToViewer()
(in
ColorMolIndexedPolygons
)
onRemoveObjectFromViewer()
(in
ControlPanel
)
onAddCmdToViewer()
(in
DeleteMolecule
)
onAddCmdToViewer()
(in
ComputeSecondaryStructureCommand
)
onRemoveObjectFromViewer()
(in
Dashboard
)
onAddCmdToViewer()
(in
DisplayCPK
)
onAddCmdToViewer()
(in
DisplayExtrudedSSCommand
)
onRemoveObjectFromViewer()
(in
DisplayLines
)
onAddCmdToViewer()
(in
DisplayCPKByProperty
)
onAddCmdToViewer()
(in
ExtrudeSecondaryStructureCommand
)
onRemoveObjectFromViewer()
(in
DisplaySticksAndBalls
)
onAddCmdToViewer()
(in
DisplayCommand
)
onAddCmdToViewer()
(in
RibbonCommand
)
onRemoveObjectFromViewer()
(in
ShowMolecules
)
onAddCmdToViewer()
(in
DisplayInteractionsCommand
)
onAddCmdToViewer()
(in
UndisplayExtrudedSSCommand
)
onRemoveObjectFromViewer()
(in
GROReader
)
onAddCmdToViewer()
(in
UndisplayBackboneTrace
)
onAddCmdToViewer()
(in
MVInvertSelection
)
onRemoveObjectFromViewer()
(in
MMCIFReader
)
onAddCmdToViewer()
(in
UndisplayCPK
)
onAddCmdToViewer()
(in
MVSelectFromStringCommand
)
onRemoveObjectFromViewer()
(in
MOL2Reader
)
onAddCmdToViewer()
(in
UndisplayLines
)
onAddCmdToViewer()
(in
MVSelectSphericalRegion
)
onRemoveObjectFromViewer()
(in
MoleculeLoader
)
onAddCmdToViewer()
(in
UndisplaySticksAndBalls
)
onAddCmdToViewer()
(in
SetTorsionGUICommand
)
onRemoveObjectFromViewer()
(in
PDBQReader
)
onAddCmdToViewer()
(in
AddHydrogensCommand
)
onAddCmdToViewer()
(in
ComputeExtrudeSplineCommand
)
onRemoveObjectFromViewer()
(in
PDBQSReader
)
onAddCmdToViewer()
(in
AddHydrogensGUICommand
)
onAddCmdToViewer()
(in
ComputeSplineGUICommand
)
onRemoveObjectFromViewer()
(in
PDBQTReader
)
onAddCmdToViewer()
(in
AddKollmanChargesCommand
)
onAddCmdToViewer()
(in
CustomSplineCommand
)
onRemoveObjectFromViewer()
(in
PDBReader
)
onAddCmdToViewer()
(in
AddKollmanChargesGUICommand
)
onAddCmdToViewer()
(in
DisplayExtrudedSplineCommand
)
onRemoveObjectFromViewer()
(in
PQRReader
)
onAddCmdToViewer()
(in
CheckChargesGUICommand
)
onAddCmdToViewer()
(in
ExtrudeSplineCommand
)
onRemoveObjectFromViewer()
(in
AddHBondCommandGUICommand
)
onAddCmdToViewer()
(in
ComputeGasteigerGUICommand
)
onAddCmdToViewer()
(in
UndisplayExtrudedSplineCommand
)
onRemoveObjectFromViewer()
(in
LimitHydrogenBonds
)
onAddCmdToViewer()
(in
EditAtomChargeGUICommand
)
onAddCmdToViewer()
(in
UndisplaySplineAsLineCommand
)
onRemoveObjectFromViewer()
(in
MeasureGUICommand
)
onAddCmdToViewer()
(in
EditAtomTypeGUICommand
)
onAddCmdToViewer()
(in
SuperImposeAtomsCommand
)
onRemoveObjectFromViewer()
(in
ComputeSecondaryStructureCommand
)
onAddCmdToViewer()
(in
FixHydrogenAtomNamesGUICommand
)
onAddCmdToViewer()
(in
SuperImposeAtomsGUICommand
)
onRemoveObjectFromViewer()
(in
ExtrudeSecondaryStructureCommand
)
onAddCmdToViewer()
(in
MergeLonePairsGUICommand
)
onAddCmdToViewer()
(in
SuperimposeCoordsCommand
)
onRemoveObjectFromViewer()
(in
MVSelectSetCommand
)
onAddCmdToViewer()
(in
MergeNPHsGUICommand
)
onAddCmdToViewer()
(in
SuperimposeAtomsCommand
)
onRemoveObjectFromViewer()
(in
MVSelectSphericalRegion
)
onAddCmdToViewer()
(in
SetChargeCommand
)
onAddCmdToViewer()
(in
SuperimposeAtomsGUICommand
)
onRemoveObjectFromViewer()
(in
SetTorsionGUICommand
)
onAddCmdToViewer()
(in
SplitNodesCommand
)
onAddCmdToViewer()
(in
SuperimposeCommand
)
onRemoveObjectFromViewer()
(in
ComputeSplineCommand
)
onAddCmdToViewer()
(in
SplitNodesGUICommand
)
onAddCmdToViewer()
(in
ComputeExtrudeTraceCommand
)
onRemoveObjectFromViewer()
(in
DisplaySplineAsLineCommand
)
onAddCmdToViewer()
(in
DisplayPath3DCommand
)
onAddCmdToViewer()
(in
ComputeTraceCommand
)
onRemoveObjectFromViewer()
(in
ExtrudeSplineCommand
)
onAddCmdToViewer()
(in
GROReader
)
onAddCmdToViewer()
(in
CustomTraceCommand
)
onRemoveObjectFromViewer()
(in
SuperImposeAtomsGUICommand
)
onAddCmdToViewer()
(in
MMCIFReader
)
onAddCmdToViewer()
(in
DisplayTraceCommand
)
onRemoveObjectFromViewer()
(in
SuperimposeAtomsGUICommand
)
onAddCmdToViewer()
(in
MOL2Reader
)
onAddCmdToViewer()
(in
ExtrudeTraceCommand
)
onRemoveObjFromViewer()
(in
CheckForCloseContactsGUICommand
)
onAddCmdToViewer()
(in
MoleculeReader
)
onAddCmdToViewer()
(in
OpenTrajectoryCommand
)
onRemoveObjFromViewer()
(in
CheckForMissingAtoms
)
onAddCmdToViewer()
(in
PDBQReader
)
onAddCmdToViewer()
(in
PlayTrajectoryCommand
)
onRemoveObjFromViewer()
(in
CheckForMissingAtomsGUICommand
)
onAddCmdToViewer()
(in
PDBQSReader
)
onAddCmdToViewer()
(in
loadVUFile
)
onRemoveObjFromViewer()
(in
RepairMissingAtoms
)
onAddCmdToViewer()
(in
PDBQTReader
)
onAddCmdToViewer()
(in
loadVect
)
onRemoveObjFromViewer()
(in
RepairMissingAtomsGUICommand
)
onAddCmdToViewer()
(in
PDBReader
)
onAddCmdToViewer()
(in
VisionCommand
)
opacity_cb()
(in
IGraph
)
onAddCmdToViewer()
(in
PQRReader
)
onAddCmdToViewer()
(in
WriteColoredM
)
open()
(in
Grid3DCommands
)
onAddCmdToViewer()
(in
VRML2Writer
)
onAddCmdToViewer()
(in
WriteSTL
)
OpenTrajectoryCommand
(in
Pmv.trajectoryCommands
)
onAddCmdToViewer()
(in
AddRemove
)
onAddNewCmd()
(in
MVIcomGUI
)
OpenTrajectoryGUI
(in
Pmv.trajectoryCommands
)
onAddCmdToViewer()
(in
Grid3DCommands
)
onAddNewCmd()
(in
ExportSets
)
openTrajFile_cb()
(in
PlayTrajectoryCommand
)
onAddCmdToViewer()
(in
IsocontourCommand
)
onAddNewCmd()
(in
VisionCommand
)
openurl()
(in
About
)
onAddCmdToViewer()
(in
OrthoSliceCommand
)
onAddObjectToViewer()
(in
APBSMap_Potential_to_MSMS
)
operate_cb()
(in
SLCommand
)
onAddCmdToViewer()
(in
VolRenCommand
)
onAddObjectToViewer()
(in
APBSRun
)
operateBsptSets()
(in
SLGeom
)
onAddCmdToViewer()
(in
readAnyGrid
)
onAddObjectToViewer()
(in
APBSSetup
)
OPS
(in
Pmv.SLCommands
)
onAddCmdToViewer()
(in
AutoGridIsoSurface
)
onAddObjectToViewer()
(in
coarseMolSurface
)
optMenu_cb()
(in
LabelColumnDescriptor
)
onAddCmdToViewer()
(in
AutoGridReader
)
onAddObjectToViewer()
(in
ColorByChain
)
optMenu_cb()
(in
MSMSColumnDescriptor
)
onAddCmdToViewer()
(in
DXReader
)
onAddObjectToViewer()
(in
ColorByInstance
)
optMenu_cb()
(in
RibbonColumnDescriptor
)
onAddCmdToViewer()
(in
DeleteAutoGrid
)
onAddObjectToViewer()
(in
ColorByMolecule
)
OrthoSlice()
(in
Grid3DCommands
)
onAddCmdToViewer()
(in
GetOrthoSlice
)
onAddObjectToViewer()
(in
ControlPanel
)
OrthoSliceCommand
(in
Pmv.grid3DCommands
)
onAddCmdToViewer()
(in
GridReader
)
onAddObjectToViewer()
(in
Dashboard
)
OrthoSliceGUI
(in
Pmv.grid3DCommands
)
onAddCmdToViewer()
(in
AddHBondCommandGUICommand
)
onAddObjectToViewer()
(in
DeleteMolecule
)
OutputFilesType_Def
(in
nbcr_sdsc_edu_apbs_types
)
onAddCmdToViewer()
(in
AddHBondHydrogens
)
onAddObjectToViewer()
(in
DisplayBackboneTrace
)
onAddCmdToViewer()
(in
AddHBondHydrogensGUICommand
)
onAddObjectToViewer()
(in
DisplayCPK
)
P
p
(in
Pmv.Ribbon
)
pickedVerticesToAtoms()
(in
BindGeomToMolecularFragment
)
pmvlib
(in
Pmv.VisionInterface.PmvNodes
)
ParallelParamsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
pickedVerticesToAtoms()
(in
DisplayPath3DCommand
)
PmvMolecule
(in
Pmv.VisionInterface.PmvNodes
)
ParallelParamUpdate()
(in
APBSSetup
)
pickedVerticesToAtoms()
(in
ComputeMSMS
)
PmvMoleculeChooser
(in
Pmv.VisionInterface.PmvNodes
)
ParameterType_Def
(in
nbcr_sdsc_edu_apbs_types
)
pickedVerticesToAtoms()
(in
ReadMolIndexedPolygons
)
PmvNode
(in
Pmv.VisionInterface.PmvNodes
)
paramUpdateAll()
(in
APBSSetup
)
pickedVerticesToAtoms()
(in
ExtrudeSecondaryStructureCommand
)
PmvNodes
(in
Pmv.VisionInterface
)
parse()
(in
MSMSParser
)
pickedVerticesToAtoms()
(in
DisplaySplineAsLineCommand
)
pmvPalettes
(in
Pmv
)
PCOMGUI
(in
Pmv.interactiveCommands
)
pickedVerticesToAtoms()
(in
ExtrudeSplineCommand
)
PmvRunCommand
(in
Pmv.VisionInterface.PmvNodes
)
pdb2pqrCommands
(in
Pmv
)
pickedVerticesToAtoms()
(in
ComputeTraceCommand
)
PmvSetCPKRadii
(in
Pmv.VisionInterface.PmvNodes
)
pdbDescr
(in
Pmv.fileCommands
)
pickedVerticesToBonds()
(in
ComputeMSMS
)
PmvSetInstanceMatrices
(in
Pmv.VisionInterface.PmvNodes
)
PDBQReader
(in
Pmv.fileCommands
)
pickedVerticesToBonds()
(in
ReadMolIndexedPolygons
)
PmvSetNode
(in
Pmv.VisionInterface.PmvNodes
)
pdbqReaderGuiDescr
(in
Pmv.fileCommands
)
picker
(in
Pmv
)
PmvType
(in
Pmv.VisionInterface.PmvTypes
)
PDBQSReader
(in
Pmv.fileCommands
)
piecewiseLinearInterpOnIsovalue()
(in
coarseMolSurface
)
PmvTypes
(in
Pmv.VisionInterface
)
pdbqsReaderGuiDescr
(in
Pmv.fileCommands
)
Play_cb()
(in
PlayMolecularDynamicsTrjAmber94
)
PmvViewer
(in
Pmv.VisionInterface.PmvNodes
)
PDBQSWriter
(in
Pmv.fileCommands
)
PlayMolecularDynamicsTrjAmber94
(in
Pmv.amberCommands
)
PmvVolume
(in
Pmv.VisionInterface.PmvNodes
)
PDBQSWriterGUI
(in
Pmv.fileCommands
)
PlayMolecularDynamicsTrjAmber94CommandGUI
(in
Pmv.amberCommands
)
postMoleculeMenu()
(in
MolFragNodeWithButtons
)
pdbqsWriterGuiDescr
(in
Pmv.fileCommands
)
playTraj()
(in
PlayTrajectoryCommand
)
Povray
(in
Pmv.povrayCommands
)
PDBQTReader
(in
Pmv.fileCommands
)
PlayTrajectoryCommand
(in
Pmv.trajectoryCommands
)
povrayCommands
(in
Pmv
)
pdbqtReaderGuiDescr
(in
Pmv.fileCommands
)
PlayTrajectoryGUI
(in
Pmv.trajectoryCommands
)
PovrayGUI
(in
Pmv.povrayCommands
)
PDBQTWriter
(in
Pmv.fileCommands
)
plot_historgam()
(in
IGraph
)
povrayGuiDescr
(in
Pmv.povrayCommands
)
PDBQTWriterGUI
(in
Pmv.fileCommands
)
plot_historgam()
(in
myLUT
)
PovrayIncDir
(in
Povray
)
pdbqtWriterGuiDescr
(in
Pmv.fileCommands
)
plot_historgam()
(in
myTF
)
power
(in
Pmv.Grid
)
PDBQWriter
(in
Pmv.fileCommands
)
plot_signature()
(in
IGraph
)
PQRReader
(in
Pmv.fileCommands
)
PDBQWriterGUI
(in
Pmv.fileCommands
)
Pmv
pqrReaderGuiDescr
(in
Pmv.fileCommands
)
pdbqWriterGuiDescr
(in
Pmv.fileCommands
)
Pmv_0
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
PQRWriter
(in
Pmv.fileCommands
)
PDBReader
(in
Pmv.fileCommands
)
Pmv_0
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
pqrWriterDescr
(in
Pmv.fileCommands
)
pdbReaderGuiDescr
(in
Pmv.fileCommands
)
Pmv_Grids_24
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
PQRWriterGUI
(in
Pmv.fileCommands
)
PDBWriter
(in
Pmv.fileCommands
)
Pmv_Grids_9
(in
Pmv.VisionInterface.APBSIsoContour_net
)
print_hydrogen_bonds()
(in
DisplayInteractionsCommand
)
pdbWriterDescr
(in
Pmv.fileCommands
)
Pmv_Viewer_23
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
print_ligand_residue_contacts()
(in
DisplayInteractionsCommand
)
PDBWriterGUI
(in
Pmv.fileCommands
)
Pmv_Viewer_5
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
print_macro_residue_contacts()
(in
DisplayInteractionsCommand
)
perMol_cb()
(in
coarseMolSurface
)
Pmv_Viewer_6
(in
Pmv.VisionInterface.APBSIsoContour_net
)
printInfo()
(in
DisplayInteractionsCommand
)
perMol_cb()
(in
ComputeMSMS
)
PmvAlignmentEditor
(in
Pmv.superImposeCommands
)
process()
(in
SetupPdb2Pqr
)
PhysicsParamsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
PmvChooseCommand
(in
Pmv.VisionInterface.PmvNodes
)
processRelease_cb()
(in
MVBindCmdToKey
)
physicsParamUpdate()
(in
APBSSetup
)
PmvCmdType
(in
Pmv.VisionInterface.PmvTypes
)
PROFILES
(in
Pmv.APBSCommands
)
pi
(in
Pmv.Grid
)
PmvCommand
(in
Pmv.VisionInterface.PmvNodes
)
Pyrimidine_old
(in
Pmv.NucleicBases
)
pick_cb()
(in
SuperimposeAtomsGUICommand
)
PmvGetSelection
(in
Pmv.VisionInterface.PmvNodes
)
Q
q
(in
Pmv.qkollua
)
queryStatusInput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
queryStatusResponse
(in
Pmv.APBSService_services
)
qkollRes
(in
Pmv
)
queryStatusOutput_Dec
(in
nbcr_sdsc_edu_apbs_types
)
queryStatusResponseWrapper
(in
Pmv.APBSService_services
)
qkollua
(in
Pmv
)
queryStatusRequest
(in
Pmv.APBSService_services
)
quit()
(in
ColorMapGUI
)
queryStatus()
(in
APBSStatusPortTypeSoapBindingSOAP
)
queryStatusRequestWrapper
(in
Pmv.APBSService_services
)
R
Rainbow
(in
Pmv.pmvPalettes
)
refreshCalculationPage()
(in
APBSSetup
)
reset()
(in
ShowHydrogenBonds
)
RainbowSortedKey
(in
Pmv.pmvPalettes
)
refreshGridPage()
(in
APBSSetup
)
reset()
(in
GoCoarserFiner
)
rampHue()
(in
ColorMapGUI
)
refreshPhysicsPage()
(in
APBSSetup
)
reset()
(in
Multires
)
rampOpacity()
(in
ColorMapGUI
)
register()
(in
About
)
reset()
(in
goCoarserFiner
)
RasmolAmino
(in
Pmv.pmvPalettes
)
remainder
(in
Pmv.Grid
)
reset()
(in
ApplyTransformations
)
RasmolAminoSortedKeys
(in
Pmv.pmvPalettes
)
remove()
(in
AddRemove
)
Reset_cb()
(in
ConstrainAtomsAmber94
)
rcFolder
(in
readFromWebCommand
)
remove()
(in
MVSelectFromStringCommand
)
reset_cb()
(in
ColorMapGUI
)
rdSet()
(in
SetTorsionGUICommand
)
remove_cb()
(in
PDBWriter
)
reset_cb()
(in
SuperImposeAtomsGUICommand
)
read_cb()
(in
ColorMapGUI
)
remove_profile()
(in
APBSSetup
)
reset_cb()
(in
SuperimposeAtomsGUICommand
)
readAnyGrid
(in
Pmv.grid3DCommands
)
removeAlreadySelected()
(in
AtomPicker
)
resetAll()
(in
SetTorsionGUICommand
)
readAnyGridGUI
(in
Pmv.grid3DCommands
)
removeAlreadySelected()
(in
BondPicker
)
resetAngle()
(in
SetTorsionGUICommand
)
ReadAutoGridMap()
(in
Pmv.Grid
)
RemoveBondsCommand
(in
Pmv.bondsCommands
)
resetDisplay()
(in
LimitHydrogenBonds
)
ReadBlur
(in
Pmv.sdCommands
)
RemoveBondsGUICommand
(in
Pmv.bondsCommands
)
ResourceFolder
(in
Pmv.APBSCommands
)
ReadBlurGUI
(in
Pmv.sdCommands
)
RemoveBondsGUICommandGUI
(in
Pmv.bondsCommands
)
RestoreBsptCommand
(in
Pmv.SLCommands
)
readBrepFile()
(in
SLGeom
)
removeCallback()
(in
ShowMolecules
)
RestoreBsptGUI
(in
Pmv.SLCommands
)
readBspt()
(in
SLGeom
)
removeFromList()
(in
ApplyTransformations
)
restoreCpk()
(in
DisplayInteractionsCommand
)
ReadDockdata
(in
Pmv.sdCommands
)
removeFromSpecs_cb()
(in
DefinePdbSpecifications
)
resultURI
(in
readFromWebCommand
)
ReadDockdataGUI
(in
Pmv.sdCommands
)
removeHBond()
(in
DeleteAtomSet
)
returnEntries()
(in
StringSelectorGUI
)
readFile0()
(in
SLGeom
)
RemoveHBondCommand
(in
Pmv.hbondCommands
)
revert()
(in
DisplayInteractionsCommand
)
readFromWebCommand
(in
Pmv.fileCommands
)
RemoveHBondCommandGUICommand
(in
Pmv.hbondCommands
)
Ribbon
(in
Pmv
)
readFromWebGUI
(in
Pmv.fileCommands
)
RemoveHBondCommandGUICommandGUI
(in
Pmv.hbondCommands
)
ribbon2D()
(in
Pmv.Ribbon
)
ReadHarmony
(in
Pmv.sdCommands
)
RemoveHBondGuiDescr
(in
Pmv.hbondCommands
)
RibbonColumnDescriptor
(in
Pmv.dashboard
)
ReadHarmonyGUI
(in
Pmv.sdCommands
)
removeIon()
(in
APBSSetup
)
RibbonCommand
(in
Pmv.secondaryStructureCommands
)
ReadIntermolHBonds
(in
Pmv.hbondCommands
)
reorderAtoms()
(in
FixAmberResNamesAndOrderAtomsCommand
)
RibbonGUI
(in
Pmv.secondaryStructureCommands
)
ReadIntermolHBondsGUI
(in
Pmv.hbondCommands
)
repack_xyz()
(in
MVSelectSphericalRegion
)
ribbonGuiDescr
(in
Pmv.secondaryStructureCommands
)
ReadIntermolHBondsGuiDescr
(in
Pmv.hbondCommands
)
repairCommands
(in
Pmv
)
ribdrw()
(in
Pmv.Ribbon
)
ReadMolIndexedPolygons
(in
Pmv.sdCommands
)
RepairMissingAtoms
(in
Pmv.repairCommands
)
Right_Isocontour_8
(in
Pmv.VisionInterface.APBSIsoContour_net
)
ReadMSMS
(in
Pmv.msmsCommands
)
RepairMissingAtomsGUICommand
(in
Pmv.repairCommands
)
right_shift
(in
Pmv.Grid
)
ReadMSMS
(in
Pmv.sdCommands
)
RepairMissingAtomsGUICommandGUI
(in
Pmv.repairCommands
)
Right_Visible()
(in
APBSDisplay_Isocontours
)
ReadMSMSGUI
(in
Pmv.msmsCommands
)
repairMissingAtomsGUICommandGuiDescr
(in
Pmv.repairCommands
)
rightButtonClick()
(in
MolFragTreeWithButtons
)
readTrajectory()
(in
Trajectory
)
repeat_transTors()
(in
SetTorsionGUICommand
)
rightClick
(in
Pmv.grid3DCommands
)
ReadTransformations
(in
Pmv.sdCommands
)
resDict
(in
Pmv.qkollRes
)
rm_neg_inds()
(in
SLCommand
)
ReadTransformationsGUI
(in
Pmv.sdCommands
)
reset()
(in
DisplayInteractionsCommand
)
root
(in
Pmv.stringSelectorGUI
)
refmovedown_cb()
(in
SuperimposeAtomsGUICommand
)
reset()
(in
AddRemove
)
run()
(in
APBSCmdToWebService
)
refmoveup_cb()
(in
SuperimposeAtomsGUICommand
)
reset()
(in
BuildHydrogenBonds
)
run()
(in
APBSDisplay_Isocontours
)
refremove_cb()
(in
SuperimposeAtomsGUICommand
)
reset()
(in
DisplayHBonds
)
runPovray()
(in
Povray
)
refreshAll()
(in
APBSSetup
)
reset()
(in
LimitHydrogenBonds
)
runWS()
(in
APBSSetup
)
S
s
(in
Pmv.Ribbon
)
set_gridsize()
(in
coarseMolSurface
)
setupUndoBefore()
(in
DisplayCPK
)
SaltUpdate()
(in
APBSSetup
)
Set_ion()
(in
PhysicsParamsType_Def
)
setupUndoBefore()
(in
DisplayCPKByProperty
)
satColor()
(in
ColorMapGUI
)
set_isovalue()
(in
coarseMolSurface
)
setupUndoBefore()
(in
DisplayInteractionsCommand
)
save()
(in
DisplayInteractionsCommand
)
Set_jobID()
(in
JobSubOutputType_Def
)
setupUndoBefore()
(in
DisplayLines
)
save()
(in
Grid3DCommands
)
Set_length()
(in
GridType_Def
)
setupUndoBefore()
(in
DisplaySticksAndBalls
)
save_sets()
(in
CheckForCloseContactsGUICommand
)
Set_mcOut()
(in
APBSOutputType_Def
)
setupUndoBefore()
(in
AddKollmanChargesCommand
)
SaveBsptCommand
(in
Pmv.SLCommands
)
Set_message()
(in
FaultType_Def
)
setupUndoBefore()
(in
ComputeGasteigerCommand
)
SaveBsptGUI
(in
Pmv.SLCommands
)
Set_message()
(in
StatusOutputType_Def
)
setupUndoBefore()
(in
EditAtomChargeGUICommand
)
saveErrResidues()
(in
CheckChargesGUICommand
)
Set_molecule()
(in
ElectrostaticPotentialInputType_Def
)
setupUndoBefore()
(in
EditAtomTypeCommand
)
saveLUT_Dict()
(in
VolRenCommand
)
Set_molecule()
(in
SolvationEnergyInputType_Def
)
setupUndoBefore()
(in
AddHBondCommand
)
SaveMMCIF
(in
Pmv.fileCommands
)
Set_molecule1()
(in
BindingEnergyInputType_Def
)
setupUndoBefore()
(in
RemoveHBondCommand
)
SaveMMCIFGUI
(in
Pmv.fileCommands
)
Set_molecule2()
(in
BindingEnergyInputType_Def
)
setupUndoBefore()
(in
MVBindCmdToKey
)
SaveMSMS
(in
Pmv.msmsCommands
)
Set_moleculeIn()
(in
APBSOutputType_Def
)
setupUndoBefore()
(in
MVSetInteractiveCmd
)
SaveMSMSGUI
(in
Pmv.msmsCommands
)
Set_moleculeName()
(in
MoleculeType_Def
)
setupUndoBefore()
(in
MeasureGUICommand
)
saveProfile()
(in
APBSSetup
)
Set_moleculeOut()
(in
APBSOutputType_Def
)
setupUndoBefore()
(in
DisplayBuriedTriangles
)
SaveResults()
(in
APBSSetup
)
Set_moleculeRadius()
(in
MoleculeType_Def
)
setupUndoBefore()
(in
DisplayIntermolecularBuriedTriangles
)
saveSel()
(in
MVSelectFromStringCommand
)
Set_name()
(in
MoleculeInType_Def
)
setupUndoBefore()
(in
DisplayMSMS
)
saveSel_cb()
(in
ComputeMSMS
)
Set_name()
(in
MoleculeOutType_Def
)
setupUndoBefore()
(in
MVSetIcomLevel
)
savesets()
(in
ComputeSecondaryStructureCommand
)
Set_numGridPoints()
(in
GridParamsType_Def
)
setupUndoBefore()
(in
MVSetSelectionLevel
)
saveSpecs_cb()
(in
DefinePdbSpecifications
)
Set_outputFiles()
(in
CalculationParamsType_Def
)
setupUndoBefore()
(in
SelectVertex
)
scale()
(in
Multires
)
Set_overlapFactor()
(in
ParallelParamsType_Def
)
setupUndoBefore()
(in
DisplayExtrudedSSCommand
)
schema
(in
APBSOutputType_Def
)
set_padding()
(in
coarseMolSurface
)
setupUndoBefore()
(in
MVClearSelection
)
schema
(in
BindingEnergyInputType_Def
)
Set_parallelParams()
(in
ParameterType_Def
)
setupUndoBefore()
(in
MVInvertSelection
)
schema
(in
BlockingOutputType_Def
)
Set_params()
(in
BindingEnergyInputType_Def
)
setupUndoBefore()
(in
MVSelectCommand
)
schema
(in
CalculationParamsType_Def
)
Set_params()
(in
ElectrostaticPotentialInputType_Def
)
setupUndoBefore()
(in
MVSelectFromStringCommand
)
schema
(in
ElectrostaticPotentialInputType_Def
)
Set_params()
(in
SolvationEnergyInputType_Def
)
setupUndoBefore()
(in
MVSelectSetCommand
)
schema
(in
FaultType_Def
)
set_pdb2pqr_Path()
(in
APBSPreferences
)
setupUndoBefore()
(in
MVSelectSphericalRegion
)
schema
(in
GridCardinalityType_Def
)
Set_physicsParams()
(in
ParameterType_Def
)
setupUndoBefore()
(in
SetTorsionGUICommand
)
schema
(in
GridParamsType_Def
)
Set_procGrid()
(in
ParallelParamsType_Def
)
setupUndoBefore()
(in
DisplayExtrudedSplineCommand
)
schema
(in
GridType_Def
)
Set_proteinDielectric()
(in
PhysicsParamsType_Def
)
setupUndoBefore()
(in
DisplaySplineAsLineCommand
)
schema
(in
IonType_Def
)
Set_radius()
(in
IonType_Def
)
setupUndoBefore()
(in
DisplayTraceCommand
)
schema
(in
JobIDType_Def
)
Set_radius()
(in
AtomType_Def
)
setUpWidgets()
(in
DisplayHBonds
)
schema
(in
JobSubOutputType_Def
)
Set_residueName()
(in
AtomType_Def
)
setUpWidgets()
(in
DisplayHBondsAsCylinders
)
schema
(in
MoleculeInType_Def
)
Set_residueNumber()
(in
AtomType_Def
)
setUpWidgets()
(in
DisplayHBondsAsSpheres
)
schema
(in
MoleculeOutType_Def
)
set_resolution()
(in
coarseMolSurface
)
Shapely
(in
Pmv.pmvPalettes
)
schema
(in
OutputFilesType_Def
)
Set_sasaCoeff()
(in
PhysicsParamsType_Def
)
shapes
(in
LUT_data
)
schema
(in
ParallelParamsType_Def
)
Set_solventDielectric()
(in
PhysicsParamsType_Def
)
Sheet2D
(in
Pmv.extruder
)
schema
(in
ParameterType_Def
)
Set_solventRadius()
(in
PhysicsParamsType_Def
)
Shift_cb()
(in
MVIcomGUI
)
schema
(in
PhysicsParamsType_Def
)
Set_status()
(in
BlockingOutputType_Def
)
show()
(in
CPCommandEditor
)
schema
(in
SolvationEnergyInputType_Def
)
Set_status()
(in
JobSubOutputType_Def
)
show()
(in
ControlPanel
)
schema
(in
StatusOutputType_Def
)
Set_stdErr()
(in
APBSOutputType_Def
)
show()
(in
Dashboard
)
schema
(in
apbsFaultOutput_Dec
)
Set_stdOut()
(in
APBSOutputType_Def
)
show()
(in
Grid3DCommands
)
schema
(in
calculateBindingEnergyBlockingInput_Dec
)
Set_surfaceCoefficients()
(in
CalculationParamsType_Def
)
show()
(in
VisionCommand
)
schema
(in
calculateBindingEnergyBlockingOutput_Dec
)
Set_symUnique()
(in
AtomType_Def
)
Show_cb()
(in
StringSelectorGUI
)
schema
(in
calculateBindingEnergyInput_Dec
)
Set_systemTemperature()
(in
PhysicsParamsType_Def
)
show_upload_page()
(in
BugReportCommand
)
schema
(in
calculateBindingEnergyOutput_Dec
)
Set_type()
(in
MoleculeOutType_Def
)
show_widget_group()
(in
DefinePdbSpecifications
)
schema
(in
calculateElectrostaticPotentialBlockingInput_Dec
)
Set_url()
(in
MoleculeInType_Def
)
showAllCloseContacts()
(in
CheckForCloseContactsGUICommand
)
schema
(in
calculateElectrostaticPotentialBlockingOutput_Dec
)
Set_url()
(in
MoleculeOutType_Def
)
showAllHBonds()
(in
DisplayHBonds
)
schema
(in
calculateElectrostaticPotentialInput_Dec
)
Set_value()
(in
JobIDType_Def
)
showAllHBonds()
(in
DisplayHBondsAsCylinders
)
schema
(in
calculateElectrostaticPotentialOutput_Dec
)
Set_x()
(in
GridCardinalityType_Def
)
showAllHBonds()
(in
ShowHydrogenBonds
)
schema
(in
calculateSolvationEnergyBlockingInput_Dec
)
Set_x()
(in
CoordinateType_Def
)
showAngles()
(in
ShowHydrogenBonds
)
schema
(in
calculateSolvationEnergyBlockingOutput_Dec
)
Set_y()
(in
GridCardinalityType_Def
)
showCloseContacts()
(in
CheckForCloseContactsGUICommand
)
schema
(in
calculateSolvationEnergyInput_Dec
)
Set_y()
(in
CoordinateType_Def
)
showColormap()
(in
myTF
)
schema
(in
calculateSolvationEnergyOutput_Dec
)
Set_z()
(in
GridCardinalityType_Def
)
ShowDashboard
(in
Pmv.dashboardCommands
)
schema
(in
destroyInput_Dec
)
Set_z()
(in
CoordinateType_Def
)
showDejaVu()
(in
IGraph
)
schema
(in
getOutputsInput_Dec
)
setAnchors()
(in
ConstrainAtomsAmber94
)
showDistances()
(in
ShowHydrogenBonds
)
schema
(in
getOutputsOutput_Dec
)
setangleCommands
(in
Pmv
)
showEnergies()
(in
LimitHydrogenBonds
)
schema
(in
queryStatusInput_Dec
)
setAVerts()
(in
DisplayHBonds
)
showEnergies()
(in
ShowHydrogenBonds
)
schema
(in
queryStatusOutput_Dec
)
setAVerts()
(in
ExtrudeHydrogenBonds
)
showErrResidue()
(in
CheckChargesGUICommand
)
schema
(in
AtomType_Def
)
setBBmode()
(in
MVColumnDescriptor
)
showForm()
(in
ColorCommand
)
schema
(in
CoordinateType_Def
)
setButton()
(in
CenterChooser
)
showFrameParms_cb()
(in
TrajPlayer
)
schema
(in
MoleculeType_Def
)
setButtonState()
(in
MVSelectFromStringCommand
)
showGeom()
(in
ShowHBDonorsAcceptors
)
sdCommands
(in
Pmv
)
setCallback()
(in
TreeViewWithCheckbuttons
)
ShowHBDonorsAcceptors
(in
Pmv.hbondCommands
)
searchURI
(in
readFromWebCommand
)
setCenter_cb()
(in
MVSelectSphericalRegion
)
ShowHBDonorsAcceptorsGUI
(in
Pmv.hbondCommands
)
secondaryStructureCommands
(in
Pmv
)
setChain()
(in
CPCommandEditor
)
ShowHBDonorsAcceptorsGuiDescr
(in
Pmv.hbondCommands
)
SecondaryStructureSides
(in
Pmv.pmvPalettes
)
SetChargeCommand
(in
Pmv.editCommands
)
showHBondLC()
(in
DisplayHBonds
)
SecondaryStructureType
(in
Pmv.pmvPalettes
)
SetChargeCommandGUI
(in
Pmv.editCommands
)
showHBondLC()
(in
ExtrudeHydrogenBonds
)
SecuritymyproxyloginImpl_address
(in
SecuritymyproxyloginImplServiceLocator
)
setChargeGUICommandGuiDescr
(in
Pmv.editCommands
)
showHBondLC()
(in
LimitHydrogenBonds
)
SecuritymyproxyloginImplService_services
(in
Pmv
)
setcmode()
(in
Pmv
)
showHBondLC()
(in
ShowHydrogenBonds
)
SecuritymyproxyloginImplServiceInterface
(in
Pmv.SecuritymyproxyloginImplService_services
)
setColors()
(in
MsmsNPR
)
showHideAll_cb()
(in
ShowMolecules
)
SecuritymyproxyloginImplServiceLocator
(in
Pmv.SecuritymyproxyloginImplService_services
)
setConstrainedAtoms()
(in
MinimizeAmber94
)
showHideSecondaryStructure()
(in
DisplayInteractionsCommand
)
SecurityMyproxyloginServiceSoapBindingSOAP
(in
Pmv.SecuritymyproxyloginImplService_services
)
setConstrainedAtoms()
(in
MolecularDynamicsAmber94
)
ShowHydrogenBonds
(in
Pmv.hbondCommands
)
SecurityuserimportImpl_address
(in
SecurityuserimportImplServiceLocator
)
setCurrentAt()
(in
ConstrainAtomsAmber94
)
ShowHydrogenBondsGUI
(in
Pmv.hbondCommands
)
SecurityuserimportImplService_services
(in
Pmv
)
setData()
(in
SetupAmber94
)
ShowHydrogenBondsGuiDescr
(in
Pmv.hbondCommands
)
SecurityuserimportImplServiceInterface
(in
Pmv.SecurityuserimportImplService_services
)
setDefault()
(in
SuperImposeAtomsGUICommand
)
ShowMoleculeGUI
(in
Pmv.displayCommands
)
SecurityuserimportImplServiceLocator
(in
Pmv.SecurityuserimportImplService_services
)
setDefault()
(in
SuperimposeAtomsGUICommand
)
showMoleculeGuiDescr
(in
Pmv.displayCommands
)
SecurityUserImportServiceSoapBindingSOAP
(in
Pmv.SecurityuserimportImplService_services
)
setDial_cb()
(in
SaveMSMS
)
ShowMolecules
(in
Pmv.displayCommands
)
selAllHBonds()
(in
ShowHydrogenBonds
)
setDistSelector_cb()
(in
CheckForCloseContactsGUICommand
)
showPDBHelp()
(in
PDBWriter
)
select()
(in
AddRemove
)
setdmode()
(in
Pmv
)
showpmvlog_cb()
(in
BugReportCommand
)
select()
(in
Grid3DCommands
)
setDVerts()
(in
DisplayHBonds
)
showUndisplayed_cb()
(in
ColorCommand
)
select()
(in
IsocontourCommand
)
setDVerts()
(in
ExtrudeHydrogenBonds
)
sin
(in
Pmv.Grid
)
select()
(in
OrthoSliceCommand
)
setEntry_cb()
(in
PDBWriter
)
sinh
(in
Pmv.Grid
)
select()
(in
VolRenCommand
)
setEntry_cb()
(in
ReadMSMS
)
sl
(in
Pmv.SLCommands
)
select()
(in
PmvAlignmentEditor
)
setEntry_cb()
(in
SaveMSMS
)
SLCommand
(in
Pmv.SLCommands
)
select_cb()
(in
SaveBsptCommand
)
setFrozenAtoms()
(in
MinimizeAmber94
)
SLCommands
(in
Pmv
)
select_cb()
(in
ShowHBDonorsAcceptors
)
setFrozenAtoms()
(in
MolecularDynamicsAmber94
)
SLGeom
(in
Pmv.SLCommands
)
select_cb()
(in
MVSelectSphericalRegion
)
SetIsovalue
(in
Pmv.gridCommands
)
SLGUI
(in
Pmv.SLCommands
)
select_custom()
(in
APBSMap_Potential_to_MSMS
)
setIsoValue()
(in
IGraph
)
Slice_Data_18
(in
Pmv.VisionInterface.APBSPot2MSMS_net
)
select_profile()
(in
APBSSetup
)
setLastUsedValues()
(in
DisplayCommand
)
slideCallback()
(in
SetTorsionGUICommand
)
select_surfname()
(in
coarseMolSurface
)
setLength()
(in
MeasureGUICommand
)
SolvationEnergyInputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
selectall_cb()
(in
ColorCommand
)
setLength_cb()
(in
MeasureGUICommand
)
sort_entries()
(in
SLCommand
)
selectAllRes()
(in
CheckForMissingAtomsGUICommand
)
setLevel()
(in
MVInteractiveCmdCaller
)
sp2Acceptors
(in
Pmv.hbondCommands
)
selectColDescr
(in
Pmv.dashboard
)
setLevel()
(in
MVSelectCommand
)
sp2Donors
(in
Pmv.hbondCommands
)
selectCurRes()
(in
CheckForMissingAtomsGUICommand
)
setLevel_cb()
(in
MVIcomGUI
)
sp3Acceptors
(in
Pmv.hbondCommands
)
selected()
(in
myTF
)
setLevel_cb()
(in
MVSetSelectionLevel
)
sp3Donors
(in
Pmv.hbondCommands
)
selectFirstMolecule_cb()
(in
DisplayIntermolecularBuriedTriangles
)
setMax()
(in
AutoGridSliceGui
)
specEntries
(in
Pmv.genparserCommands
)
selectFromString()
(in
TreeViewWithCheckbuttons
)
setMax()
(in
IGraph
)
splineCommands
(in
Pmv
)
selectFromString()
(in
MolFragTreeWithButtons
)
setMax()
(in
myTF
)
split_cb()
(in
myTF
)
selectionCommands
(in
Pmv
)
setMdOpts()
(in
MolecularDynamicsAmber94
)
SplitNodesCommand
(in
Pmv.editCommands
)
selectionLevel
(in
MoleculeViewer
)
SetMDOptsAmber94
(in
Pmv.amberCommands
)
SplitNodesGUICommand
(in
Pmv.editCommands
)
selectItem()
(in
KeySelectable
)
SetMDOptsAmber94CommandGUI
(in
Pmv.amberCommands
)
SplitNodesGUICommandGUI
(in
Pmv.editCommands
)
selectMol()
(in
GoCoarserFiner
)
setMin()
(in
AutoGridSliceGui
)
splitNodesGUICommandGuiDescr
(in
Pmv.editCommands
)
selectMolecule_cb()
(in
AssignBuriedAreas
)
setMin()
(in
IGraph
)
sqrt
(in
Pmv.Grid
)
selectMolecule_cb()
(in
DisplayBuriedTriangles
)
setMin()
(in
myTF
)
startICOM()
(in
AddBondsGUICommand
)
selectMolecule_cb()
(in
IdentifyBuriedVertices
)
SetMinimOptsAmber94
(in
Pmv.amberCommands
)
startICOM()
(in
EditAtomChargeGUICommand
)
selectMoveBar()
(in
IGraph
)
SetMinimOptsAmber94CommandGUI
(in
Pmv.amberCommands
)
startICOM()
(in
EditAtomTypeGUICommand
)
selectNonZeroGrids()
(in
Pmv.Grid
)
setMinOpts()
(in
MinimizeAmber94
)
startICOM()
(in
AddHBondCommandGUICommand
)
selectSecondMolecule_cb()
(in
DisplayIntermolecularBuriedTriangles
)
setMobSequence()
(in
PmvAlignmentEditor
)
startICOM()
(in
MeasureGUICommand
)
selectSurf()
(in
GoCoarserFiner
)
SetMode_cb()
(in
TrajPlayer
)
startICOM()
(in
AddOXTGUICommand
)
SelectVertex
(in
Pmv.sdCommands
)
setMode_cb()
(in
TrajPlayer
)
startICOM()
(in
MVSelectCommand
)
SelectVertexGUI
(in
Pmv.sdCommands
)
setNewCoords()
(in
PDBWriter
)
startICOM()
(in
SetTorsionGUICommand
)
selFromPref()
(in
ApplyTransformations
)
setOutputFiles()
(in
APBSSetup
)
startOver()
(in
SetTorsionGUICommand
)
Set
(in
Pmv.Grid
)
setPlayMode_cb()
(in
TrajPlayer
)
startPMV()
(in
Pmv
)
set()
(in
StringSelectorGUI
)
SetQuaternion
(in
Pmv.setangleCommands
)
startSelPick()
(in
MVSelectFromStringCommand
)
set_APBS_Path()
(in
APBSPreferences
)
setRadius_cb()
(in
MVSelectSphericalRegion
)
state
(in
Pmv.VisionInterface.APBSIsoContour_net
)
Set_apbsIn()
(in
APBSOutputType_Def
)
setRaiseException()
(in
MoleculeViewer
)
state_GUI
(in
Pmv.APBSCommands
)
Set_apbsOut()
(in
BlockingOutputType_Def
)
setRefSequence()
(in
PmvAlignmentEditor
)
StatusOutputType_Def
(in
nbcr_sdsc_edu_apbs_types
)
Set_atom()
(in
MoleculeType_Def
)
SetRelativeTorsion
(in
Pmv.setangleCommands
)
stepBack()
(in
SetTorsionGUICommand
)
Set_atomicNumber()
(in
AtomType_Def
)
setResidueProperties()
(in
ExtrudeObject
)
STLWriter
(in
Pmv.fileCommands
)
Set_atomName()
(in
AtomType_Def
)
setResProperties()
(in
ExtrudeSSElt
)
STLWriterGUI
(in
Pmv.fileCommands
)
Set_atomNumber()
(in
AtomType_Def
)
SetRMSRef_cb()
(in
TrajPlayer
)
stlWriterGuiDescr
(in
Pmv.fileCommands
)
Set_baseURL()
(in
StatusOutputType_Def
)
sets__
(in
Pmv.selectionCommands
)
stop()
(in
RemoveBondsGUICommand
)
Set_boundaryConditions()
(in
CalculationParamsType_Def
)
setSelLev()
(in
MoleculeViewer
)
stop()
(in
RemoveHBondCommandGUICommand
)
Set_calculationParams()
(in
ParameterType_Def
)
setStripProperty()
(in
ExtrudeObject
)
Stop_cb()
(in
PlayMolecularDynamicsTrjAmber94
)
Set_centerCoords()
(in
GridType_Def
)
setTexCoords()
(in
ComputeMSMS
)
stopICOM()
(in
AddBondsGUICommand
)
Set_centerMol()
(in
GridType_Def
)
SetTorsion
(in
Pmv.setangleCommands
)
stopICOM()
(in
EditAtomChargeGUICommand
)
Set_charge()
(in
IonType_Def
)
SetTorsionGUI
(in
Pmv.setangleCommands
)
stopICOM()
(in
EditAtomTypeGUICommand
)
Set_charge()
(in
AtomType_Def
)
SetTorsionGUICommand
(in
Pmv.setangleCommands
)
stopICOM()
(in
MeasureGUICommand
)
Set_chargeDiscretization()
(in
CalculationParamsType_Def
)
setTorsionGuiDescr
(in
Pmv.setangleCommands
)
stopICOM()
(in
SetTorsionGUICommand
)
Set_coarseGrid()
(in
GridParamsType_Def
)
SetTranslation
(in
Pmv.setangleCommands
)
stopICOM()
(in
SuperImposeAtomsGUICommand
)
Set_code()
(in
StatusOutputType_Def
)
setTransparency()
(in
IGraph
)
stopICOM()
(in
SuperimposeAtomsGUICommand
)
set_color_A()
(in
Nucleic_Acids_properties
)
setUp()
(in
EditAtomChargeGUICommand
)
stopSelection()
(in
MVSelectSphericalRegion
)
set_color_C()
(in
Nucleic_Acids_properties
)
SetupAmber94
(in
Pmv.amberCommands
)
strArg()
(in
MVCommand
)
set_color_G()
(in
Nucleic_Acids_properties
)
SetupAmber94CommandGUI
(in
Pmv.amberCommands
)
string_cb()
(in
SuperImposeAtomsGUICommand
)
set_color_T()
(in
Nucleic_Acids_properties
)
setupDisplay()
(in
DisplayHBonds
)
string_cb()
(in
SuperimposeAtomsGUICommand
)
set_color_U()
(in
Nucleic_Acids_properties
)
setupDisplay()
(in
ShowHydrogenBonds
)
stringSelectorGUI
(in
Pmv
)
Set_complex()
(in
BindingEnergyInputType_Def
)
setupDisplay()
(in
CheckForCloseContactsGUICommand
)
StringSelectorGUI
(in
Pmv.stringSelectorGUI
)
Set_concentration()
(in
IonType_Def
)
SetupMultires()
(in
Multires
)
strSel
(in
Pmv.stringSelectorGUI
)
Set_coordinates()
(in
AtomType_Def
)
SetupPdb2Pqr
(in
Pmv.pdb2pqrCommands
)
subtract
(in
Pmv.Grid
)
set_custom_isovalue()
(in
coarseMolSurface
)
SetupPdb2PqrCommandGUI
(in
Pmv.pdb2pqrCommands
)
superimpose_cb()
(in
SuperImposeAtomsGUICommand
)
set_custom_resolution()
(in
coarseMolSurface
)
setupUndoAfter()
(in
AddBondsGUICommand
)
superimpose_cb()
(in
SuperimposeAtomsGUICommand
)
Set_elementName()
(in
AtomType_Def
)
setupUndoAfter()
(in
AddHBondCommandGUICommand
)
SuperImposeAtomsCommand
(in
Pmv.superImposeCommands
)
Set_energyOutput()
(in
CalculationParamsType_Def
)
setupUndoAfter()
(in
RemoveHBondCommandGUICommand
)
SuperimposeAtomsCommand
(in
Pmv.superimposeCommandsNew
)
Set_equationType()
(in
CalculationParamsType_Def
)
setupUndoAfter()
(in
SetTorsionGUICommand
)
SuperimposeAtomsCommandGUI
(in
Pmv.superimposeCommandsNew
)
Set_fieldName()
(in
AtomType_Def
)
setupUndoBefore()
(in
APBSMap_Potential_to_MSMS
)
SuperImposeAtomsGUICommand
(in
Pmv.superImposeCommands
)
Set_fileFormat()
(in
OutputFilesType_Def
)
setupUndoBefore()
(in
AddBondsCommand
)
SuperimposeAtomsGUICommand
(in
Pmv.superimposeCommandsNew
)
set_filename()
(in
MolecularDynamicsAmber94
)
setupUndoBefore()
(in
RemoveBondsCommand
)
SuperImposeAtomsGUICommandGUI
(in
Pmv.superImposeCommands
)
Set_fileOutput()
(in
OutputFilesType_Def
)
setupUndoBefore()
(in
RemoveBondsGUICommand
)
SuperimposeCommand
(in
Pmv.superimposeCommandsNew
)
Set_fineGrid()
(in
GridParamsType_Def
)
setupUndoBefore()
(in
ColorByExpression
)
superImposeCommands
(in
Pmv
)
Set_forceOutput()
(in
CalculationParamsType_Def
)
setupUndoBefore()
(in
ColorByProperties
)
superimposeCommandsNew
(in
Pmv
)
Set_format()
(in
MoleculeInType_Def
)
setupUndoBefore()
(in
ColorCommand
)
SuperimposeCoordsCommand
(in
Pmv.superImposeCommands
)
Set_format()
(in
MoleculeOutType_Def
)
setupUndoBefore()
(in
ColorFromPalette
)
SurfaceCoefficientsType_Def
(in
nbcr_sdsc_edu_apbs_types
)
Set_gridParams()
(in
ParameterType_Def
)
setupUndoBefore()
(in
DisplayBackboneTrace
)
T
tag
(in
BoundaryConditionsType_Def
)
transformedCoordinatesWithInstances()
(in
MoleculeViewer
)
typecode
(in
calculateBindingEnergyBlockingRequestWrapper
)
tag
(in
ChargeDiscretizationType_Def
)
transformGeoms()
(in
ApplyTransformations
)
typecode
(in
calculateBindingEnergyBlockingResponse
)
tag
(in
EnergyAndForceOutputType_Def
)
transformMol()
(in
ApplyTransformations
)
typecode
(in
calculateBindingEnergyBlockingResponseWrapper
)
tag
(in
EquationTypeType_Def
)
TreeViewWithCheckbuttons
(in
Pmv.controlPanelCommands
)
typecode
(in
calculateBindingEnergyRequest
)
tag
(in
FileFormatType_Def
)
triangle_normal()
(in
Pmv.SLCommands
)
typecode
(in
calculateBindingEnergyRequestWrapper
)
tag
(in
FileOutputType_Def
)
triangulate_strips()
(in
SLCommand
)
typecode
(in
calculateBindingEnergyResponse
)
tag
(in
MoleculeFormatType_Def
)
true_divide
(in
Pmv.Grid
)
typecode
(in
calculateBindingEnergyResponseWrapper
)
tag
(in
SurfaceCoefficientsType_Def
)
tupleArrayElement()
(in
Pmv.Grid
)
typecode
(in
calculateElectrostaticPotentialBlockingRequest
)
tag
(in
FieldNameType_Def
)
tupleArrayList()
(in
Pmv.Grid
)
typecode
(in
calculateElectrostaticPotentialBlockingRequestWrapper
)
tan
(in
Pmv.Grid
)
tupleArrayOrder()
(in
Pmv.Grid
)
typecode
(in
calculateElectrostaticPotentialBlockingResponse
)
tanh
(in
Pmv.Grid
)
tupleArrayOrderList()
(in
Pmv.Grid
)
typecode
(in
calculateElectrostaticPotentialBlockingResponseWrapper
)
targetNamespace
(in
nbcr_sdsc_edu_apbs_types
)
tupleElement
(in
Pmv.Grid
)
typecode
(in
calculateElectrostaticPotentialRequest
)
targetNamespace
(in
nbcr_sdsc_edu_molecule_types
)
type
(in
APBSOutputType_Def
)
typecode
(in
calculateElectrostaticPotentialRequestWrapper
)
test
(in
Pmv.APBSCommands
)
type
(in
BindingEnergyInputType_Def
)
typecode
(in
calculateElectrostaticPotentialResponse
)
test
(in
Pmv.colorMap
)
type
(in
BlockingOutputType_Def
)
typecode
(in
calculateElectrostaticPotentialResponseWrapper
)
testCalculationWidgets()
(in
APBSSetup
)
type
(in
CalculationParamsType_Def
)
typecode
(in
calculateSolvationEnergyBlockingRequest
)
testGridWidgets()
(in
APBSSetup
)
type
(in
ElectrostaticPotentialInputType_Def
)
typecode
(in
calculateSolvationEnergyBlockingRequestWrapper
)
testMSMSParser()
(in
Pmv.msmsParser
)
type
(in
FaultType_Def
)
typecode
(in
calculateSolvationEnergyBlockingResponse
)
testPhysicsWidgets()
(in
APBSSetup
)
type
(in
GridCardinalityType_Def
)
typecode
(in
calculateSolvationEnergyBlockingResponseWrapper
)
timeBspt()
(in
SLCommand
)
type
(in
GridParamsType_Def
)
typecode
(in
calculateSolvationEnergyRequest
)
timeOut()
(in
KeySelectable
)
type
(in
GridType_Def
)
typecode
(in
calculateSolvationEnergyRequestWrapper
)
To1Ds()
(in
Grid
)
type
(in
IonType_Def
)
typecode
(in
calculateSolvationEnergyResponse
)
To3D()
(in
Grid
)
type
(in
JobIDType_Def
)
typecode
(in
calculateSolvationEnergyResponseWrapper
)
To3Ds()
(in
Grid
)
type
(in
JobSubOutputType_Def
)
typecode
(in
destroyRequest
)
toggle_usrpass()
(in
APBSSetup
)
type
(in
MoleculeInType_Def
)
typecode
(in
destroyRequestWrapper
)
toggleSelSpheres()
(in
MVSelectFromStringCommand
)
type
(in
MoleculeOutType_Def
)
typecode
(in
destroyResponse
)
top
(in
Pmv.stringSelectorGUI
)
type
(in
OutputFilesType_Def
)
typecode
(in
destroyResponseWrapper
)
torsion()
(in
MeasureTorsion
)
type
(in
ParallelParamsType_Def
)
typecode
(in
getOutputsRequest
)
TorsionAngle
(in
Pmv.setangleCommands
)
type
(in
ParameterType_Def
)
typecode
(in
getOutputsRequestWrapper
)
torsionAngle()
(in
Pmv.setangleCommands
)
type
(in
PhysicsParamsType_Def
)
typecode
(in
getOutputsResponse
)
TorsionHistory
(in
Pmv.setangleCommands
)
type
(in
SolvationEnergyInputType_Def
)
typecode
(in
getOutputsResponseWrapper
)
tostring()
(in
Grid
)
type
(in
StatusOutputType_Def
)
typecode
(in
queryStatusRequest
)
totalGridPoints()
(in
APBSSetup
)
type
(in
AtomType_Def
)
typecode
(in
queryStatusRequestWrapper
)
traceCommands
(in
Pmv
)
type
(in
CoordinateType_Def
)
typecode
(in
queryStatusResponse
)
Trajectory
(in
Pmv.trajectoryCommands
)
type
(in
MoleculeType_Def
)
typecode
(in
queryStatusResponseWrapper
)
trajectoryCommands
(in
Pmv
)
TypeAtomsCommand
(in
Pmv.editCommands
)
typecode
(in
loginUserMyProxyRequestWrapper
)
TrajPlayer
(in
Pmv.trajectoryCommands
)
TypeAtomsCommandGUI
(in
Pmv.editCommands
)
typecode
(in
loginUserMyProxyResponseWrapper
)
TrajPlayerCached
(in
Pmv.trajectoryCommands
)
typeAtomsCommandGuiDescr
(in
Pmv.editCommands
)
typecode
(in
listUsersRequestWrapper
)
TrajSliderWidget
(in
Pmv.trajectoryCommands
)
TypeBondsCommand
(in
Pmv.editCommands
)
typecode
(in
listUsersResponseWrapper
)
Transform
(in
Pmv.sdCommands
)
TypeBondsCommandGUI
(in
Pmv.editCommands
)
typecode()
(in
Grid
)
TransformAtomsCommand
(in
Pmv.superimposeCommandsNew
)
typeBondsCommandGuiDescr
(in
Pmv.editCommands
)
typecodeDict
(in
Pmv.grid3DCommands
)
transformCoords()
(in
SetTorsionGUICommand
)
typecode
(in
calculateBindingEnergyBlockingRequest
)
U
Unconstrain_cb()
(in
ConstrainAtomsAmber94
)
update()
(in
TrajPlayer
)
updateGUI()
(in
MsmsPicker
)
undisplay()
(in
ColorPalette
)
update_a_b()
(in
IGraph
)
updateGUI()
(in
NewMsmsPicker
)
UndisplayBackboneTrace
(in
Pmv.displayCommands
)
update_a_b()
(in
myLUT
)
updateHBonds()
(in
DisplayInteractionsCommand
)
UndisplayBoundGeom
(in
Pmv.displayCommands
)
update_cb()
(in
LabelByExpression
)
updateHistory()
(in
SetTorsionGUICommand
)
UndisplayCPK
(in
Pmv.displayCommands
)
update_cb()
(in
LabelByProperties
)
updateICOMWidget()
(in
MVIcomGUI
)
UndisplayExtrudedSplineCommand
(in
Pmv.splineCommands
)
update_cb()
(in
MeasureGUICommand
)
updateInfo_cb()
(in
LabelByExpression
)
UndisplayExtrudedSSCommand
(in
Pmv.secondaryStructureCommands
)
update_managed_sets()
(in
DisplayInteractionsCommand
)
updateInfoBar()
(in
MVSelectCommand
)
UndisplayLines
(in
Pmv.displayCommands
)
update_molecule()
(in
SetupPdb2Pqr
)
updateLabels()
(in
ConstrainAtomsAmber94
)
UndisplayMolIndexedPolygons
(in
Pmv.sdCommands
)
update_old_values()
(in
CheckForCloseContactsGUICommand
)
updateLabels()
(in
FreezeAtomsAmber94
)
UndisplayMSMS
(in
Pmv.msmsCommands
)
update_SpecBox()
(in
DefinePdbSpecifications
)
updateLevel_cb()
(in
ColorByProperties
)
UndisplaySplineAsLineCommand
(in
Pmv.splineCommands
)
update_xyz()
(in
MVSelectSphericalRegion
)
updateLevel_cb()
(in
DisplayCPKByProperty
)
UndisplaySticksAndBalls
(in
Pmv.displayCommands
)
updateAllAtoms()
(in
MergeSetsCommand
)
updateMap()
(in
AutoGridSurfaceGui
)
undo()
(in
AddBondsCommand
)
updateBase()
(in
MVSelectSphericalRegion
)
updateMiniMaxi()
(in
ColorByExpression
)
undo()
(in
AddHBondCommand
)
updateCBB()
(in
ComputeMSMS
)
updateMiniMaxi()
(in
ColorByProperties
)
undo()
(in
MeasureGUICommand
)
updateCCCpk()
(in
DisplayInteractionsCommand
)
updateMiniMaxi()
(in
DisplayCPKByProperty
)
Unfreeze_cb()
(in
FreezeAtomsAmber94
)
updateCenter()
(in
MVSelectSphericalRegion
)
updateMM()
(in
DisplayInteractionsCommand
)
uniqueSort()
(in
Pmv.Grid
)
updateChildren()
(in
StringSelectorGUI
)
updateMsms()
(in
DisplayInteractionsCommand
)
unlabelLevel()
(in
SuperImposeAtomsGUICommand
)
updateChooser()
(in
ColorByProperties
)
updateObjectDict()
(in
SLCommand
)
unlabelLevel()
(in
SuperimposeAtomsGUICommand
)
updateChooser()
(in
DisplayCPKByProperty
)
updateOpacity()
(in
MolGeomContainer
)
unsolicitedPick()
(in
MoleculeViewer
)
updateChooser()
(in
LabelByProperties
)
updatePercentCutoff()
(in
DisplayInteractionsCommand
)
Update
(in
Pmv.updateCommands
)
updateChooser()
(in
SuperImposeAtomsGUICommand
)
updatePiCation()
(in
DisplayInteractionsCommand
)
Update()
(in
APBSDisplay_Isocontours
)
updateCM()
(in
ColorByExpression
)
updatePiPi()
(in
DisplayInteractionsCommand
)
update()
(in
ConstrainAtomsAmber94
)
updateCM()
(in
ColorByProperties
)
updateProps()
(in
Povray
)
update()
(in
FreezeAtomsAmber94
)
updateCM()
(in
DisplayCPKByProperty
)
updatePropVals()
(in
DisplayCPKByProperty
)
update()
(in
MinimizeAmber94
)
updateColors()
(in
MolGeomContainer
)
updateQuality()
(in
DisplayHBonds
)
update()
(in
MolecularDynamicsAmber94
)
updateCommands
(in
Pmv
)
updateQuality()
(in
DisplayHBondsAsSpheres
)
update()
(in
PlayMolecularDynamicsTrjAmber94
)
updateCoords()
(in
MinimizeAmber94
)
updateResLabels()
(in
DisplayInteractionsCommand
)
update()
(in
SetMDOptsAmber94
)
updateCoords()
(in
MolecularDynamicsAmber94
)
updateSecondaryStructure()
(in
DisplayInteractionsCommand
)
update()
(in
SetMinimOptsAmber94
)
updateCpk()
(in
DisplayInteractionsCommand
)
updateSelectionFeedback()
(in
MVSelectCommand
)
update()
(in
AddBondsGUICommand
)
updateDisplay()
(in
ExtrudeHydrogenBonds
)
updateSelectionIcons()
(in
MVSelectCommand
)
update()
(in
AddHBondCommandGUICommand
)
updateDisplay()
(in
LimitHydrogenBonds
)
updateselLevel()
(in
MVSelectFromStringCommand
)
update()
(in
DisplayHBonds
)
updateExtrusion_cb()
(in
ExtrudeHydrogenBonds
)
updateSetVal()
(in
AutoGridSurfaceGui
)
update()
(in
DisplayHBondsAsCylinders
)
updateForm()
(in
ComputeMSMS
)
updateSphereDisplay()
(in
DisplayInteractionsCommand
)
update()
(in
DisplayHBondsAsSpheres
)
updateForm2()
(in
ConstrainAtomsAmber94
)
updateTexCoords()
(in
ComputeMSMS
)
update()
(in
LimitHydrogenBonds
)
updateForm2Entries()
(in
ConstrainAtomsAmber94
)
updateTotalCharge()
(in
CheckChargesGUICommand
)
update()
(in
MeasureAngleGUICommand
)
updateGeom()
(in
DisplayCommand
)
updateValMinMax()
(in
ColorByProperties
)
update()
(in
MeasureDistanceCtrlGUICommand
)
updateGeoms()
(in
ConstrainAtomsAmber94
)
updateValMinMax()
(in
DisplayCPKByProperty
)
update()
(in
MeasureDistanceGUICommand
)
UpdateGUI
(in
Pmv.updateCommands
)
user
(in
Pmv.guiTools
)
update()
(in
MeasureTorsionGUICommand
)
updateGUI()
(in
AtomPicker
)
UT_Blur_2
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
update()
(in
SetTorsionGUICommand
)
updateGUI()
(in
BondPicker
)
UT_Isocontour_3
(in
Pmv.VisionInterface.CoarseMolSurface_net
)
V
v
(in
Pmv.Ribbon
)
vi
(in
Pmv.Ribbon
)
VolRen()
(in
Grid3DCommands
)
valColor()
(in
ColorMapGUI
)
VideoCommand
(in
Pmv.videoCommands
)
VolRenCommand
(in
Pmv.grid3DCommands
)
validateEmail()
(in
BugReportCommand
)
VideoCommandGUI
(in
Pmv.videoCommands
)
VolumeStats_1
(in
Pmv.VisionInterface.APBSIsoContour_net
)
values
(in
LUT_data
)
videoCommands
(in
Pmv
)
VRML2Writer
(in
Pmv.fileCommands
)
var
(in
Pmv.bondsCommands
)
view_list
(in
Kill
)
VRML2WriterGUI
(in
Pmv.fileCommands
)
VarDict
(in
Pmv.helpCommands
)
visibilityColDescr
(in
Pmv.dashboard
)
vrml2WriterGuiDescr
(in
Pmv.fileCommands
)
variableTypes
(in
Pmv.genparserCommands
)
VisionCommand
(in
Pmv.visionCommands
)
vvmult()
(in
MeasureAtomCommand
)
vectfieldCommands
(in
Pmv
)
VisionCommandGUI
(in
Pmv.visionCommands
)
vvmult()
(in
Pmv.setangleCommands
)
verifyMolName()
(in
ApplyTransformations
)
visionCommands
(in
Pmv
)
vi
(in
Pmv.NucleicBases
)
VisionInterface
(in
Pmv
)
W
width
(in
Pmv.Ribbon
)
writeBspt()
(in
SLGeom
)
writeList()
(in
ApplyTransformations
)
width
(in
readFromWebCommand
)
writeCMsurface()
(in
WriteColoredM
)
writeMsmsAsCommands
(in
Pmv
)
width
(in
Pmv.grid3DCommands
)
WriteColoredM
(in
Pmv.writeMsmsAsCommands
)
writePdb()
(in
ApplyTransformations
)
write_cb()
(in
ColorMapGUI
)
WriteColoredMGUI
(in
Pmv.writeMsmsAsCommands
)
writePdbq()
(in
ApplyTransformations
)
Write_cb()
(in
TrajPlayer
)
writeColoredMGuiDescr
(in
Pmv.writeMsmsAsCommands
)
WriteSTL
(in
Pmv.writeMsmsAsCommands
)
write_conf()
(in
TrajPlayer
)
writeFile()
(in
Povray
)
writeSTLCATrace()
(in
WriteSTL
)
write_from_specBox()
(in
DefinePdbSpecifications
)
writeHYDBNDRecords()
(in
WriteAssemblyHBonds
)
WriteSTLGUI
(in
Pmv.writeMsmsAsCommands
)
WriteAssemblyHBonds
(in
Pmv.hbondCommands
)
WriteIntermolHBonds
(in
Pmv.hbondCommands
)
writeSTLGuiDescr
(in
Pmv.writeMsmsAsCommands
)
WriteAssemblyHBondsGUI
(in
Pmv.hbondCommands
)
WriteIntermolHBondsGUI
(in
Pmv.hbondCommands
)
writeSTLsurface()
(in
WriteSTL
)
WriteAssemblyHBondsGuiDescr
(in
Pmv.hbondCommands
)
WriteIntermolHBondsGuiDescr
(in
Pmv.hbondCommands
)
WS_http()
(in
APBSSetup
)
X
X_ColorMap()
(in
OrthoSliceCommand
)
X_Slice()
(in
OrthoSliceCommand
)
X_ColorMap_cb()
(in
OrthoSliceCommand
)
xor()
(in
MVSelectFromStringCommand
)
Y
Y_ColorMap()
(in
OrthoSliceCommand
)
Y_ColorMap_cb()
(in
OrthoSliceCommand
)
Y_Slice()
(in
OrthoSliceCommand
)
Z
Z_ColorMap()
(in
OrthoSliceCommand
)
Z_ColorMap_cb()
(in
OrthoSliceCommand
)
Z_Slice()
(in
OrthoSliceCommand
)
_
__abs__()
(in
Grid
)
__call__()
(in
ComputeSecondaryStructureCommand
)
__init__()
(in
SetupAmber94
)
__add__()
(in
Grid
)
__call__()
(in
DisplayExtrudedSSCommand
)
__init__()
(in
AddBondsGUICommand
)
__add__()
(in
Set
)
__call__()
(in
ExtrudeSecondaryStructureCommand
)
__init__()
(in
BuildBondsByDistance
)
__and__()
(in
Set
)
__call__()
(in
RibbonCommand
)
__init__()
(in
RemoveBondsGUICommand
)
__array__()
(in
Grid
)
__call__()
(in
UndisplayExtrudedSSCommand
)
__init__()
(in
coarseMolSurface
)
__call__()
(in
APBSDisplayOrthoSlice
)
__call__()
(in
MVAddSelectCommand
)
__init__()
(in
ColorByAtomType
)
__call__()
(in
APBSDisplay_Isocontours
)
__call__()
(in
MVClearSelection
)
__init__()
(in
ColorByChain
)
__call__()
(in
APBSLoad_Profile
)
__call__()
(in
MVCreateSetIfNeeded
)
__init__()
(in
ColorByDG
)
__call__()
(in
APBSMap_Potential_to_MSMS
)
__call__()
(in
MVDeSelectCommand
)
__init__()
(in
ColorByExpression
)
__call__()
(in
APBSRun
)
__call__()
(in
MVDirectSelectCommand
)
__init__()
(in
ColorByInstance
)
__call__()
(in
APBSSave_Profile
)
__call__()
(in
MVInvertSelection
)
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MOL2Reader
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destroyResponseWrapper
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PDBQSWriter
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MVPrintNodeNames
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DXReader
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MVSetSelectionLevel
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SetupPdb2Pqr
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