stride.stride

1 # This file was automatically generated by SWIG (http://www.swig.org). 2 # Version 1.3.31 3 # 4 # Don't modify this file, modify the SWIG interface instead. 5 # This file is compatible with both classic and new-style classes. 6 7 import _stride 8 import new 9 new_instancemethod = new.instancemethod 10 try: 11 _swig_property = property 12 except NameError: 13 pass # Python < 2.2 doesn't have 'property'.

14 -def _swig_setattr_nondynamic(self,class_type,name,value,static=1):

15 if (name == "thisown"): return self.this.own(value) 16 if (name == "this"): 17 if type(value).__name__ == 'PySwigObject': 18 self.__dict__[name] = value 19 return 20 method = class_type.__swig_setmethods__.get(name,None) 21 if method: return method(self,value) 22 if (not static) or hasattr(self,name): 23 self.__dict__[name] = value 24 else: 25 raise AttributeError("You cannot add attributes to %s" % self)

27 -def _swig_setattr(self,class_type,name,value):

28 return _swig_setattr_nondynamic(self,class_type,name,value,0)

30 -def _swig_getattr(self,class_type,name):

31 if (name == "thisown"): return self.this.own() 32 method = class_type.__swig_getmethods__.get(name,None) 33 if method: return method(self) 34 raise AttributeError,name

36 -def _swig_repr(self):

37 try: strthis = "proxy of " + self.this.__repr__() 38 except: strthis = "" 39 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

40 41 import types 42 try: 43 _object = types.ObjectType 44 _newclass = 1 45 except AttributeError:

46 - class _object : pass

47 _newclass = 0 48 del types 49 50 51 BREAKDIST = _stride.BREAKDIST 52 SSDIST = _stride.SSDIST 53 SUCCESS = _stride.SUCCESS 54 FAILURE = _stride.FAILURE 55 YES = _stride.YES 56 NO = _stride.NO 57 ERR = _stride.ERR 58 BUFSZ = _stride.BUFSZ 59 MAX_FIELD = _stride.MAX_FIELD 60 MAX_AtomType = _stride.MAX_AtomType 61 MAX_ResType = _stride.MAX_ResType 62 MAXNONSTAND = _stride.MAXNONSTAND 63 MAX_CHAIN = _stride.MAX_CHAIN 64 MAX_RES = _stride.MAX_RES 65 MAX_HETRES = _stride.MAX_HETRES 66 MAX_HET = _stride.MAX_HET 67 MAX_HELIX = _stride.MAX_HELIX 68 MAX_SHEET = _stride.MAX_SHEET 69 MAX_STRAND_IN_SHEET = _stride.MAX_STRAND_IN_SHEET 70 MAX_TURN = _stride.MAX_TURN 71 MAX_BOND = _stride.MAX_BOND 72 MAX_ASSIGN = _stride.MAX_ASSIGN 73 MAX_INFO = _stride.MAX_INFO 74 MAX_AT_IN_RES = _stride.MAX_AT_IN_RES 75 MAX_AT_IN_HETERORES = _stride.MAX_AT_IN_HETERORES 76 MAXRESDNR = _stride.MAXRESDNR 77 MAXRESACC = _stride.MAXRESACC 78 RES_FIELD = _stride.RES_FIELD 79 AT_FIELD = _stride.AT_FIELD 80 MAX_X = _stride.MAX_X 81 MAX_Y = _stride.MAX_Y 82 MAX_Z = _stride.MAX_Z 83 MIN_X = _stride.MIN_X 84 MIN_Y = _stride.MIN_Y 85 MIN_Z = _stride.MIN_Z 86 MAX_Occupancy = _stride.MAX_Occupancy 87 MIN_Occupancy = _stride.MIN_Occupancy 88 MAX_TempFactor = _stride.MAX_TempFactor 89 MIN_TempFactor = _stride.MIN_TempFactor 90 OUTPUTWIDTH = _stride.OUTPUTWIDTH 91 MAXCONDITIONS = _stride.MAXCONDITIONS 92 MAXHYDRBOND = _stride.MAXHYDRBOND 93 MAXDONOR = _stride.MAXDONOR 94 MAXACCEPTOR = _stride.MAXACCEPTOR 95 MINPHIPSI = _stride.MINPHIPSI 96 MAXPHIPSI = _stride.MAXPHIPSI 97 DEFNUMPIXEL = _stride.DEFNUMPIXEL 98 DIST_N_H = _stride.DIST_N_H 99 RmGRID = _stride.RmGRID 100 EmGRID = _stride.EmGRID 101 MINACCANG_SP2 = _stride.MINACCANG_SP2 102 MAXACCANG_SP2 = _stride.MAXACCANG_SP2 103 MINACCANG_SP3 = _stride.MINACCANG_SP3 104 MAXACCANG_SP3 = _stride.MAXACCANG_SP3 105 MINDONANG_SP2 = _stride.MINDONANG_SP2 106 MAXDONANG_SP2 = _stride.MAXDONANG_SP2 107 MINDONANG_SP3 = _stride.MINDONANG_SP3 108 MAXDONANG_SP3 = _stride.MAXDONANG_SP3 109 ACCDONANG = _stride.ACCDONANG 110 DONACCANG = _stride.DONACCANG 111 NAcd = _stride.NAcd 112 Stride = _stride.Stride 113 Pdb = _stride.Pdb 114 Dssp = _stride.Dssp 115 XRay = _stride.XRay 116 NMR = _stride.NMR 117 Model = _stride.Model 118 Nsp2 = _stride.Nsp2 119 Nsp3 = _stride.Nsp3 120 Osp2 = _stride.Osp2 121 Osp3 = _stride.Osp3 122 Ssp3 = _stride.Ssp3 123 Peptide = _stride.Peptide 124 Trp = _stride.Trp 125 Asn = _stride.Asn 126 Gln = _stride.Gln 127 Arg = _stride.Arg 128 His = _stride.His 129 Lys = _stride.Lys 130 Ser = _stride.Ser 131 Thr = _stride.Thr 132 Tyr = _stride.Tyr 133 Asp = _stride.Asp 134 Glu = _stride.Glu 135 Met = _stride.Met 136 Cys = _stride.Cys 137 MM = _stride.MM 138 MS = _stride.MS 139 SM = _stride.SM 140 SS = _stride.SS 141 MAX_FILE = _stride.MAX_FILE

142 -class CHAINLIST(_object):

143 __swig_setmethods__ = {} 144 __setattr__ = lambda self, name, value: _swig_setattr(self, CHAINLIST, name, value) 145 __swig_getmethods__ = {} 146 __getattr__ = lambda self, name: _swig_getattr(self, CHAINLIST, name) 147 __repr__ = _swig_repr 148 __swig_setmethods__["FileName"] = _stride.CHAINLIST_FileName_set 149 __swig_getmethods__["FileName"] = _stride.CHAINLIST_FileName_get 150 if _newclass:FileName = _swig_property(_stride.CHAINLIST_FileName_get, _stride.CHAINLIST_FileName_set) 151 __swig_setmethods__["ChainId"] = _stride.CHAINLIST_ChainId_set 152 __swig_getmethods__["ChainId"] = _stride.CHAINLIST_ChainId_get 153 if _newclass:ChainId = _swig_property(_stride.CHAINLIST_ChainId_get, _stride.CHAINLIST_ChainId_set)

154 - def __init__(self, *args):

155 this = _stride.new_CHAINLIST(*args) 156 try: self.this.append(this) 157 except: self.this = this

158 __swig_destroy__ = _stride.delete_CHAINLIST 159 __del__ = lambda self : None; 160 CHAINLIST_swigregister = _stride.CHAINLIST_swigregister 161 CHAINLIST_swigregister(CHAINLIST) 162

163 -class PROPERTY(_object):

199 - def __init__(self, *args):

200 this = _stride.new_PROPERTY(*args) 201 try: self.this.append(this) 202 except: self.this = this

203 __swig_destroy__ = _stride.delete_PROPERTY 204 __del__ = lambda self : None; 205 PROPERTY_swigregister = _stride.PROPERTY_swigregister 206 PROPERTY_swigregister(PROPERTY) 207

208 -class INVOLVED(_object):

229 - def __init__(self, *args):

230 this = _stride.new_INVOLVED(*args) 231 try: self.this.append(this) 232 except: self.this = this

233 __swig_destroy__ = _stride.delete_INVOLVED 234 __del__ = lambda self : None; 235 INVOLVED_swigregister = _stride.INVOLVED_swigregister 236 INVOLVED_swigregister(INVOLVED) 237

238 -class RESIDUE(_object):

271 - def _Coord(*args): return _stride.RESIDUE__Coord(*args)

272 - def getAtomType(*args): return _stride.RESIDUE_getAtomType(*args)

273 - def __init__(self, *args):

274 this = _stride.new_RESIDUE(*args) 275 try: self.this.append(this) 276 except: self.this = this

277 __swig_destroy__ = _stride.delete_RESIDUE 278 __del__ = lambda self : None; 279 RESIDUE_swigregister = _stride.RESIDUE_swigregister 280 RESIDUE_swigregister(RESIDUE) 281

282 -class HETERORESIDUE(_object):

312 - def __init__(self, *args):

313 this = _stride.new_HETERORESIDUE(*args) 314 try: self.this.append(this) 315 except: self.this = this

316 __swig_destroy__ = _stride.delete_HETERORESIDUE 317 __del__ = lambda self : None; 318 HETERORESIDUE_swigregister = _stride.HETERORESIDUE_swigregister 319 HETERORESIDUE_swigregister(HETERORESIDUE) 320

321 -class HET(_object):

322 __swig_setmethods__ = {} 323 __setattr__ = lambda self, name, value: _swig_setattr(self, HET, name, value) 324 __swig_getmethods__ = {} 325 __getattr__ = lambda self, name: _swig_getattr(self, HET, name) 326 __repr__ = _swig_repr 327 __swig_setmethods__["HetId"] = _stride.HET_HetId_set 328 __swig_getmethods__["HetId"] = _stride.HET_HetId_get 329 if _newclass:HetId = _swig_property(_stride.HET_HetId_get, _stride.HET_HetId_set) 330 __swig_setmethods__["PDB_ResNumb"] = _stride.HET_PDB_ResNumb_set 331 __swig_getmethods__["PDB_ResNumb"] = _stride.HET_PDB_ResNumb_get 332 if _newclass:PDB_ResNumb = _swig_property(_stride.HET_PDB_ResNumb_get, _stride.HET_PDB_ResNumb_set) 333 __swig_setmethods__["InsCode"] = _stride.HET_InsCode_set 334 __swig_getmethods__["InsCode"] = _stride.HET_InsCode_get 335 if _newclass:InsCode = _swig_property(_stride.HET_InsCode_get, _stride.HET_InsCode_set) 336 __swig_setmethods__["AtomNumb"] = _stride.HET_AtomNumb_set 337 __swig_getmethods__["AtomNumb"] = _stride.HET_AtomNumb_get 338 if _newclass:AtomNumb = _swig_property(_stride.HET_AtomNumb_get, _stride.HET_AtomNumb_set)

339 - def __init__(self, *args):

340 this = _stride.new_HET(*args) 341 try: self.this.append(this) 342 except: self.this = this

343 __swig_destroy__ = _stride.delete_HET 344 __del__ = lambda self : None; 345 HET_swigregister = _stride.HET_swigregister 346 HET_swigregister(HET) 347

348 -class HELIX(_object):

375 - def __init__(self, *args):

376 this = _stride.new_HELIX(*args) 377 try: self.this.append(this) 378 except: self.this = this

379 __swig_destroy__ = _stride.delete_HELIX 380 __del__ = lambda self : None; 381 HELIX_swigregister = _stride.HELIX_swigregister 382 HELIX_swigregister(HELIX) 383

384 -class SHEET(_object):

444 - def __init__(self, *args):

445 this = _stride.new_SHEET(*args) 446 try: self.this.append(this) 447 except: self.this = this

448 __swig_destroy__ = _stride.delete_SHEET 449 __del__ = lambda self : None; 450 SHEET_swigregister = _stride.SHEET_swigregister 451 SHEET_swigregister(SHEET) 452

453 -class TURN(_object):

454 __swig_setmethods__ = {} 455 __setattr__ = lambda self, name, value: _swig_setattr(self, TURN, name, value) 456 __swig_getmethods__ = {} 457 __getattr__ = lambda self, name: _swig_getattr(self, TURN, name) 458 __repr__ = _swig_repr 459 __swig_setmethods__["Res1"] = _stride.TURN_Res1_set 460 __swig_getmethods__["Res1"] = _stride.TURN_Res1_get 461 if _newclass:Res1 = _swig_property(_stride.TURN_Res1_get, _stride.TURN_Res1_set) 462 __swig_setmethods__["Res2"] = _stride.TURN_Res2_set 463 __swig_getmethods__["Res2"] = _stride.TURN_Res2_get 464 if _newclass:Res2 = _swig_property(_stride.TURN_Res2_get, _stride.TURN_Res2_set) 465 __swig_setmethods__["PDB_ResNumb1"] = _stride.TURN_PDB_ResNumb1_set 466 __swig_getmethods__["PDB_ResNumb1"] = _stride.TURN_PDB_ResNumb1_get 467 if _newclass:PDB_ResNumb1 = _swig_property(_stride.TURN_PDB_ResNumb1_get, _stride.TURN_PDB_ResNumb1_set) 468 __swig_setmethods__["PDB_ResNumb2"] = _stride.TURN_PDB_ResNumb2_set 469 __swig_getmethods__["PDB_ResNumb2"] = _stride.TURN_PDB_ResNumb2_get 470 if _newclass:PDB_ResNumb2 = _swig_property(_stride.TURN_PDB_ResNumb2_get, _stride.TURN_PDB_ResNumb2_set) 471 __swig_setmethods__["InsCode1"] = _stride.TURN_InsCode1_set 472 __swig_getmethods__["InsCode1"] = _stride.TURN_InsCode1_get 473 if _newclass:InsCode1 = _swig_property(_stride.TURN_InsCode1_get, _stride.TURN_InsCode1_set) 474 __swig_setmethods__["InsCode2"] = _stride.TURN_InsCode2_set 475 __swig_getmethods__["InsCode2"] = _stride.TURN_InsCode2_get 476 if _newclass:InsCode2 = _swig_property(_stride.TURN_InsCode2_get, _stride.TURN_InsCode2_set) 477 __swig_setmethods__["TurnType"] = _stride.TURN_TurnType_set 478 __swig_getmethods__["TurnType"] = _stride.TURN_TurnType_get 479 if _newclass:TurnType = _swig_property(_stride.TURN_TurnType_get, _stride.TURN_TurnType_set)

480 - def __init__(self, *args):

481 this = _stride.new_TURN(*args) 482 try: self.this.append(this) 483 except: self.this = this

484 __swig_destroy__ = _stride.delete_TURN 485 __del__ = lambda self : None; 486 TURN_swigregister = _stride.TURN_swigregister 487 TURN_swigregister(TURN) 488

489 -class SSBOND(_object):

490 __swig_setmethods__ = {} 491 __setattr__ = lambda self, name, value: _swig_setattr(self, SSBOND, name, value) 492 __swig_getmethods__ = {} 493 __getattr__ = lambda self, name: _swig_getattr(self, SSBOND, name) 494 __repr__ = _swig_repr 495 __swig_setmethods__["PDB_ResNumb1"] = _stride.SSBOND_PDB_ResNumb1_set 496 __swig_getmethods__["PDB_ResNumb1"] = _stride.SSBOND_PDB_ResNumb1_get 497 if _newclass:PDB_ResNumb1 = _swig_property(_stride.SSBOND_PDB_ResNumb1_get, _stride.SSBOND_PDB_ResNumb1_set) 498 __swig_setmethods__["PDB_ResNumb2"] = _stride.SSBOND_PDB_ResNumb2_set 499 __swig_getmethods__["PDB_ResNumb2"] = _stride.SSBOND_PDB_ResNumb2_get 500 if _newclass:PDB_ResNumb2 = _swig_property(_stride.SSBOND_PDB_ResNumb2_get, _stride.SSBOND_PDB_ResNumb2_set) 501 __swig_setmethods__["InsCode1"] = _stride.SSBOND_InsCode1_set 502 __swig_getmethods__["InsCode1"] = _stride.SSBOND_InsCode1_get 503 if _newclass:InsCode1 = _swig_property(_stride.SSBOND_InsCode1_get, _stride.SSBOND_InsCode1_set) 504 __swig_setmethods__["InsCode2"] = _stride.SSBOND_InsCode2_set 505 __swig_getmethods__["InsCode2"] = _stride.SSBOND_InsCode2_get 506 if _newclass:InsCode2 = _swig_property(_stride.SSBOND_InsCode2_get, _stride.SSBOND_InsCode2_set) 507 __swig_setmethods__["ChainId1"] = _stride.SSBOND_ChainId1_set 508 __swig_getmethods__["ChainId1"] = _stride.SSBOND_ChainId1_get 509 if _newclass:ChainId1 = _swig_property(_stride.SSBOND_ChainId1_get, _stride.SSBOND_ChainId1_set) 510 __swig_setmethods__["ChainId2"] = _stride.SSBOND_ChainId2_set 511 __swig_getmethods__["ChainId2"] = _stride.SSBOND_ChainId2_get 512 if _newclass:ChainId2 = _swig_property(_stride.SSBOND_ChainId2_get, _stride.SSBOND_ChainId2_set) 513 __swig_setmethods__["AsnSource"] = _stride.SSBOND_AsnSource_set 514 __swig_getmethods__["AsnSource"] = _stride.SSBOND_AsnSource_get 515 if _newclass:AsnSource = _swig_property(_stride.SSBOND_AsnSource_get, _stride.SSBOND_AsnSource_set)

Source Code for Module stride.stride