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MGLTools License Agreements
Please read the following license agreements.
Unless otherwise specified, this software is licensed by
Michel F. SANNER and The Scripps Research Institute.
Certain pieces of software in this package provide their own licensing
scheme which you will find below.
All the components not specifying their own license are under the
Mozilla open source license.
Although this licensing scheme allows the re-distribution of this software
we would appreciate if people using it would download it from our site.
This helps us keep track of who is using it which is a strong argument when
trying to get money to work on this. Thanks !
If you have any questions please contact Michel SANNER (sanner@scripps.edu).
MGLTOOLS SOFTWARE LICENSE AGREEMENT
1. Grant Of Limited License; Software Use Restrictions. The programs received by you will be used only for NON COMMERCIAL purposes. This license is issued to you as an individual.
For COMMERCIAL use done with the software please contact Michel F. Sanner for details about commercial usage license agreements. For any question regarding license agreements, please contact Michel Sanner: TSRI, Molecular Biology Department, TCP 26, 10550 North Torrey Pines Road, La Jolla, CA 92037 sanner@scripps.edu tel (858) 784-7742 fax (858) 784-2341
2. COMMERCIAL USAGE is defined as revenues generating activities. These include using this software for consulting activities and selling applications built on top of, or using this software. Scientific research in an academic environment and teaching are considered NON COMMERCIAL.
3. Copying Restrictions. You will not sell or otherwise distribute commercially these programs or derivatives to any other party, whether with or without consideration.
4. Ownership of Software. You will not obtain, and will not attempt to obtain copyright coverage thereon without the express purpose written consent of The Scripps Research Institute and Dr. Sanner.
5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
MOZILLA OPEN SOURCE LICENSE AGREEMENT
Mozilla open source license version 1.1-
http://www.opensource.org/licenses/mozilla1.1.php
MSLIB License
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The MGLTools uses the MSLIB package to compute
molecular surfaces.
FOR COMMERCIAL USE OF MSLIB PLEASE CONTACT Michel SANNER
1. Grant Of Limited License: Software Use Restrictions. You are
free to use the program (MSMS) ONLY FOR NON-COMMERCIAL
SCIENTIFIC RESEARCH. This license is issued to you as an individual.
For institution wide use or commercial use of the software you will have
to follow the official registration procedure. To do so you can contact
us by e-mail (sanner@scripps.edu), mail (Michel Sanner, TSRI,Molecular
Biology Department, MB5, 10666 North Torrey Pines Road, 92037 La Jolla)
or fax (858) 784-2860.
2. Credits: WE REQUEST THAT YOU AGREE TO ACKNOWLEDGE THE USE OF THE
MSMS SOFTWARE THAT RESULTS IN ANY PUBLISHED WORK, INCLUDING SCIENTIFIC PAPERS,
FILMS AND VIDEOTAPES BY CITING THE FOLLOWING REFERENCE:
Sanner, M.F., Spehner, J.-C., and Olson, A.J. (1996) Reduced surface:
an efficient way to compute molecular surfaces. Biopolymers, Vol. 38, (3),
305-320.
3. Copying Restrictions: You will not sell or otherwise transfer these
programs or derivatives to any other party, whether with or without
consideration, for any purpose.
4. Ownership of Software: You will not obtain, and will not attempt to obtain
copyright coverage thereon without the express purpose written consent of The
Scripps Research Institute.
5. Limitation Of Liability: You will hold harmless from all or any expenses
you may incur as a result of or arising from your use, direct or indirect, of
these materials. You understand that no other right or license to this
program or its derivatives is granted or implied as a result of our
transmission of same to you.
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STRIDE License
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STRIDE: Protein secondary structure assignment from atomic coordinates
Dmitrij Frishman & Patrick Argos
All rights reserved, whether the whole or part of the program is
concerned. Permission to use, copy, and modify this software and its
documentation is granted for academic use, provided that:
1. This copyright notice appears in all copies of the software and
related documentation.
2. The reference given below (Frishman and Argos, 1995) must be
cited in any publication of scientific results based in part or
completely on the use of the program.
3. Bugs will be reported to the authors.
The use of the software in commercial activities is not allowed
without a prior written commercial license agreement.
WARNING:
STRIDE is provided 'as-is' and without warranty of any kind,
express, implied or otherwise, including without limitation any
warranty of merchantability or fitness for a particular purpose. In no
event will the authors be liable for any special, incidental, indirect
or consequential damages of any kind, or any damages whatsoever
resulting from loss of data or profits, whether or not advised of the
possibility of damage, and on any theory of liability, arising out of
or in connection with the use or performance of this software.
For calculation of the residue solvent accessible area the program NSC
is used and was kindly provided by Dr. F.Eisenhaber
(EISENHABER@EMBL-HEIDELBERG.DE). Please direct to him all questions
concerning specifically accessibility calculations.
Reference:
Frishman,D & Argos,P. (1995) Knowledge-based secondary structure
assignment. Proteins: structure, function and genetics, 23,
566-579.
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UTPackages License
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
1. This software is the copyright of THE UNIVERSITY OF TEXAS AT AUSTIN, 2005.
2. The software is available under multiple licenses.
3. For non commercial educational and non commercial academic use, the software including source code, interface definitions and compile scripts are freely available. Any distribution of code, library or executables which contains any modules from this software should contain, conspicously and appropriately, on each copy, this copyright and license notice and should be freely distributed.
4. If you wish to incorporate parts of the Library into other free programs whose distribution conditions are incompatible with these, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation.
5. For any other purpose, including commercial purposes, please contact The University of Texas at Austin for a different license.
6. Credits:
This software has been developed at the Computational and Visualization center under Dr Chandrajit Bajaj, Computational Applied Mathematics Chair in Visualization, Professor of Computer Sciences, Director of Center for Computational Visualization, Department of Computer Sciences & The Institute of Computational Engineering and Sciences, Center for Computational Visualization, 201 East 24th Street, ACES 2.324A, 1 University Station, C0200, Austin, TX 78712-0027.
We request that you agree to acknowledge the use of the software that results in any published work, including scientific papers, films and videotapes by citing the references listed below
For UTblur:
C. Bajaj, V. Siddavanahalli Fast Feature Adaptive Surfaces and Derivatives Computation for Volumetric Particle Data ICES and CS technical reports, The University of Texas at Austin, 2005.
For UTisocontour:
C. Bajaj, V. Pascucci, D. Schikore Accelerated IsoContouring of Scalar Fields Data Visualization Techniques, edited by C. Bajaj, John Wiley and Sons (1998).
C. Bajaj, V. Pascucci, D. Schikore Fast Isocontouring for Improved Interactivity Proceedings: ACM Siggraph/IEEE Symposium on Volume Visualization, ACM Press, (1996), San Francisco, CA. Pages: 39-46 99
For UTmesh:
Y. Zhang, C. Bajaj Adaptive and Quality Quadrilateral/Hexahedral Meshing from Volumetric Data Computer Methods in Applied Mechanics and Engineering (CMAME), in press, 2005.
Y. Zhang, C. Bajaj, B-S. Sohn 3D Finite Element Meshing from Imaging Data The special issue of Computer Methods in Applied Mechanics and Engineering (CMAME) on Unstructured Mesh Generation, 194(48-49):5083-5106, 2005.
For UTsdf:
C. Bajaj, V. Siddavanahalli An Adaptive Grid Based Method for Computing Molecular Surfaces and Properties ICES and CS Technical Reports, The University of Texas at Austin, 2005.
For UTvolrend:
C. Bajaj, Z. Yu, M. Auer Volumetric Feature Extraction and Visualization of Tomographic Molecular Imaging. Journal of Structural Biology, Volume 144, Issues 1-2, October 2003, Pages 132-143
For UTmolderivatives:
C. Bajaj, V. Siddavanahalli Fast Feature Adaptive Surfaces and Derivatives Computation for Volumetric Particle Data ICES and CS Technical Reports, The University of Texas at Austin, 2005.
7. No warranty
7a. Because the library is licensed free of charge, there is no warranty for the library, to the extent permitted by applicable law. except when otherwise stated in writing the copyright holders and/or other parties provide the library "as is" without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. the entire risk as to the quality and performance of the library is with you. should the library prove defective, you assume the cost of all necessary servicing, repair or correction.
7b. In no event unless required by applicable law or agreed to in writing will any copyright holder, or any other party who may modify and/or redistribute the library as permitted above, be liable to you for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the library (including but not limited to loss of data or data being rendered inaccurate or losses sustained by you or third parties or a failure of the library to operate with any other software), even if such holder or other party has been advised of the possibility of such damages.
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APBS License
http://apbs.sourceforge.net/doc/license/license.html
Python Imaging Library (PIL) License
http://www.pythonware.com/products/pil/license.htm
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Which of these graphics cards is installed on your computer?
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